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PAnnBuilder assembles annotation data from public data repositories and builds protein-centric annoation data packages.
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Author Hong Li
Maintainer Hong Li (sysptm@gmail.com)
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To install this package, start R and enter:
source("http://www.biosino.org/download/PAnnBuilder/PAnnBuilder.R")
PAnnBuilder()
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Vignettes (Documentation) Package Downloads
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Details
| biocViews | | Annotation, Proteomics |
| Depends | | R (>= 2.7.0), methods, utils, RSQLite, Biobase (>= 1.17.0), AnnotationDbi (>= 1.3.12) |
| Imports | | methods, utils, Biobase, DBI, RSQLite |
| License | | LGPL (>= 2.0) |
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Other Requirement
| 1. | Perl is required to parse the rather large annotation source data files. It can be downloaded from http://www.perl.com/download.csp. |
| 2. | Rtools is needed for Windows user. The matched version of Rtools with R can be downloaded via http://www.murdoch-sutherland.com/Rtools/. |
| 3. | Program formatdb and BLAST is needed for function pSeqBuilder/pSeqBuilder_DB and crossBuilder/crossBuilder_DB. |
| 4. | "R CMD build" and "R CMD --binary build" will be used to build package in command line. Detail document about how to create your own packages can be found
in the book "Writing R Extensions". For Windows users, "R CMD build" need you to have installed the files for building
source packages (which is the default), as well as the Windows toolset (see the "R Installation and Administration" manual). |
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