|
|
SQLite-based Annotation Packages Produced by PAnnBuilder
|
| Function | Source | Organism | Package | Download |
|---|
| pBaseBuilder_DB | Swiss-Prot | Homo sapiens | org.Hs.sp.db | Window ; Unix |
| pBaseBuilder_DB | IPI | Homo sapiens | org.Hs.ipi.db | Window ; Unix |
| pBaseBuilder_DB | RefSeq | Homo sapiens | org.Hs.ref.db | Window ; Unix |
| pBaseBuilder_DB | Swiss-Prot | Mus musculus | org.Mm.sp.db | Window ; Unix |
| pBaseBuilder_DB | IPI | Mus musculus | org.Mm.ipi.db | Window ; Unix |
| pBaseBuilder_DB | RefSeq | Mus musculus | org.Mm.ref.db | Window ; Unix |
| pBaseBuilder_DB | Swiss-Prot | Rattus norvegicus | org.Rn.sp.db | Window ; Unix |
| pBaseBuilder_DB | IPI | Rattus norvegicus | org.Rn.ipi.db | Window ; Unix |
| pBaseBuilder_DB | RefSeq | Rattus norvegicus | org.Rn.ref.db | Window ; Unix |
| crossBuilder_DB | Swiss-Prot, IPI, RefSeq | Homo sapiens | org.Hs.cross.db | Window ; Unix |
| crossBuilder_DB | Swiss-Prot, IPI, RefSeq | Mus musculus | org.Mm.cross.db | Window ; Unix |
| crossBuilder_DB | Swiss-Prot, IPI, RefSeq | Rattus norvegicus | org.Rn.cross.db | Window ; Unix |
| subcellBuilder_DB | BaCelLo | eukaryotes | sc.bacello.db | Window ; Unix |
| subcellBuilder_DB | DBSubLoc | -- | sc.dbsubloc.db | Window ; Unix |
| bfBuilder_DB | SysBodyFluid | Homo sapiens | org.Hs.bf.db | Window ; Unix |
| ptmBuilder_DB | SysPTM | -- | sysptm.db | Window ; Unix |
| dNameBuilder_DB | GO, KEGG, PFAM, INTERPRO, Taxonomy | -- | dName.db | Window ; Unix |
| scopBuilder_DB | SCOP | -- | scop.db | Window ; Unix |
| GOABuilder_DB | GOA | Homo sapiens | org.Hs.goa.db | Window ; Unix |
| HomoloGeneBuilder_DB | HomoloGene | -- | homolog.db | Window ; Unix |
| InParanoidBuilder_DB | InParanoid | Homo sapiens, Mus musculus | org.HsMm.ortholog.db | Window ; Unix |
| intBuilder_DB | IntAct | -- | int.intact.db | Window ; Unix |
| intBuilder_DB | NCBI Gene Interaction | -- | int.geneint.db | Window ; Unix |
| intBuilder_DB | MPPI | -- | int.mppi.db | Window ; Unix |
| intBuilder_DB | 3DID | -- | int.did.db | Window ; Unix |
| intBuilder_DB | DOMINE | -- | int.domain.db | Window ; Unix |
| PeptideAtlasBuilder_DB | PeptideAtlas | Homo sapiens | org.Hs.pep.db | Window ; Unix |
|
|
|
Environment-based Annotation Packages Produced by PAnnBuilder
|
|
|
| Function | Source | Organism | Package | Download |
|---|
| pBaseBuilder | Swiss-Prot | Homo sapiens | org.Hs.sp | Window ; Unix |
| pBaseBuilder | IPI | Homo sapiens | org.Hs.ipi | Window ; Unix |
| pBaseBuilder | RefSeq | Homo sapiens | org.Hs.ref | Window ; Unix |
| pBaseBuilder | Swiss-Prot | Mus musculus | org.Mm.sp | Window ; Unix |
| pBaseBuilder | IPI | Mus musculus | org.Mm.ipi | Window ; Unix |
| pBaseBuilder | RefSeq | Mus musculus | org.Mm.ref | Window ; Unix |
| pBaseBuilder | Swiss-Prot | Rattus norvegicus | org.Rn.sp | Window ; Unix |
| pBaseBuilder | IPI | Rattus norvegicus | org.Rn.ipi | Window ; Unix |
| pBaseBuilder | RefSeq | Rattus norvegicus | org.Rn.ref | Window ; Unix |
| crossBuilder | Swiss-Prot, IPI, RefSeq | Homo sapiens | org.Hs.cross | Window ; Unix |
| crossBuilder | Swiss-Prot, IPI, RefSeq | Mus musculus | org.Mm.cross | Window ; Unix |
| crossBuilder | Swiss-Prot, IPI, RefSeq | Rattus norvegicus | org.Rn.cross | Window ; Unix |
| subcellBuilder | BaCelLo | eukaryotes | sc.bacello | Window ; Unix |
| subcellBuilder | DBSubLoc | -- | sc.dbsubloc | Window ; Unix |
| bfBuilder | SysBodyFluid | Homo sapiens | org.Hs.bf | Window ; Unix |
| ptmBuilder | SysPTM | -- | sysptm | Window ; Unix |
| dNameBuilder | GO, KEGG, PFAM, INTERPRO, Taxonomy | -- | dName | Window ; Unix |
| scopBuilder | SCOP | -- | scop | Window ; Unix |
| GOABuilder | GOA | Homo sapiens | org.Hs.goa | Window ; Unix |
| HomoloGeneBuilder | HomoloGene | -- | homolog | Window ; Unix |
| InParanoidBuilder | InParanoid | Homo sapiens, Mus musculus | org.HsMm.ortholog | Window ; Unix |
| intBuilder | IntAct | -- | int.intact | Window ; Unix |
| intBuilder | NCBI Gene Interaction | -- | int.geneint | Window ; Unix |
| intBuilder | MPPI | -- | int.mppi | Window ; Unix |
| intBuilder | 3DID | -- | int.did | Window ; Unix |
| intBuilder | DOMINE | -- | int.domine | Window ; Unix |
| PeptideAtlasBuilder | PeptideAtlas | Homo sapiens | org.Hs.pep | Window ; Unix |
|
