Bugs in the genome

[编者的话]

水平基因转移是国际上的研究热点，在今年发布的人类基因组测序报告中提到大约有200个基因是由水平转移而来的，但是最近更细致的研究表明这个数字有待商榷，大约只有40个基因是真正的后选者。

Comparative proteome analysis identifies just 40 genes that are candidates for lateral transfer from bacteria to vertebrates.

There is much speculation about how lateral transfer - the exchange of genes between distantly related species - has shaped the evolution of the human genome. A recent publication estimated that as many as 223 bacterial genes can be found within the human genome sequence. In the May 17 ScienceExpress, Salzberg et al. report a careful re-evaluation of the number of putative bacterial-to-vertebrate transfers (BVTs; ScienceXpress 2001, 10.1126/science.1061036). The authors performed careful similarity searches to compare the proteomes from human, fruitfly, nematode worm, yeast, mustard weed, eukaryotic parasites and all completed prokaryotic genomes. They included both the Ensembl and Celera proteome sets (containing 31,780 and 26,544 proteins, respectively). Although their initial analysis revealed similar numbers to earlier estimates, careful statistical examination of the results whittled the final number of BVTs down to 41 (Ensembl) and 46 (Celera). Salzberg et al. show that the calculations are highly dependent on the number of non-vertebrate genomes screened (the number of BVTs decreases as the number of genomes rises). They conclude that gene loss and evolutionary rate variation are more likely to explain the sequence similarities than are true BVT events.