General Information
- Project ID
- OEP004644
- Project Name
- Metagenomic sequencing for diagnosis of infectious and autoimmune encephalitis and meningitis
- Description
- In this study, we collected CSF samples from 152 pediatric patients from 2020 to 2022. By comparing the transcriptomic landscape of AE patients with that of IE patients including viral and bacterial infections, we found gene expression signatures specific to each type of encephalopathy. Finally, we identified markers of AE at the gene expression levels and validated in an additional cohort, thus highlighting the important value of mNGS in the clinical diagnosis of AE.
- Related Links
- n/a n/a
Project information
- Experiments
- 1
Experiment ID Experiment name Experiment type Create Date OEX025270 CSF metagenomic sequecing Genomic 2023-10-22 - Samples
- 58
Sample ID Sample Name Sample Subject Type Organism Tissue Create Date OES330185 BE1 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330186 BE2 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330187 BE3 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330188 BE4 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330189 BE5 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330190 BE6 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330191 BE7 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330192 BE8 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330193 BE9 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330194 BE10 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330195 BE11 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330196 BE12 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330198 BE14 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330200 BE16 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330213 BE29 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330214 BE30 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330215 BE31 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330216 BE32 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330217 BE33 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330221 BE37 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330230 BE46 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330232 VE1 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330235 VE4 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330236 VE5 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330237 VE6 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330238 VE2 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330239 VE8 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330240 VE9 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330241 VE10 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330242 VE11 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330243 VE12 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330244 VE13 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330245 VE14 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330248 VE17 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330249 VE18 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330250 VE19 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330251 VE20 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330252 VE21 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330253 VE22 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330254 VE23 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330255 VE24 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330256 VE25 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330257 AE1 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330258 AE2 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330259 AE3 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330260 AE4 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330263 AE7 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330266 AE10 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330267 AE11 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330268 AE12 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330272 UN2 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330273 UN3 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330274 UN4 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330276 UN6 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330278 UN8 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330280 UN10 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330284 UN14 Human Homo sapiens Cerebrospinal fluid 2023-10-22 OES330288 UN18 Human Homo sapiens Cerebrospinal fluid 2023-10-22 - Runs
-
61
Run ID Run Name Experiment Sample Data Num Create Date OER435790 OER_Xiaozhou_2310221315 OEX025270 OES330238 2 2023-10-22 OER435820 OER_Xiaozhou_2310221331 OEX025270 OES330185 2 2023-10-22 OER435837 OER_Xiaozhou_2310221339 OEX025270 OES330187 2 2023-10-22 OER435839 OER_Xiaozhou_2310221340 OEX025270 OES330188 2 2023-10-22 OER435840 OER_Xiaozhou_2310221341 OEX025270 OES330267 2 2023-10-22 OER435841 OER_Xiaozhou_2310221343 OEX025270 OES330239 2 2023-10-22 OER435842 OER_Xiaozhou_2310221344 OEX025270 OES330236 2 2023-10-22 OER435843 OER_Xiaozhou_2310221345 OEX025270 OES330249 2 2023-10-22 OER435844 OER_Xiaozhou_2310221349 OEX025270 OES330186 2 2023-10-22 OER435845 OER_Xiaozhou_2310221350 OEX025270 OES330250 2 2023-10-22 OER435846 OER_Xiaozhou_2310221350 OEX025270 OES330240 2 2023-10-22 OER435847 OER_Xiaozhou_2310221352 OEX025270 OES330273 2 2023-10-22 OER435848 OER_Xiaozhou_2310221356 OEX025270 OES330255 2 2023-10-22 OER435849 OER_Xiaozhou_2310221400 OEX025270 OES330189 2 2023-10-22 OER435850 OER_Xiaozhou_2310221402 OEX025270 OES330190 2 2023-10-22 OER435851 OER_Xiaozhou_2310221402 OEX025270 OES330241 2 2023-10-22 OER435852 OER_Xiaozhou_2310221403 OEX025270 OES330191 2 2023-10-22 OER435853 OER_Xiaozhou_2310221403 OEX025270 OES330194 2 2023-10-22 OER435854 OER_Xiaozhou_2310221405 OEX025270 OES330196 2 2023-10-22 OER435855 OER_Xiaozhou_2310221405 OEX025270 OES330242 2 2023-10-22 OER435856 OER_Xiaozhou_2310221408 OEX025270 OES330272 2 2023-10-22 OER435857 OER_Xiaozhou_2310221409 OEX025270 OES330274 2 2023-10-22 OER435858 OER_Xiaozhou_2310221410 OEX025270 OES330195 2 2023-10-22 OER435859 OER_Xiaozhou_2310221411 OEX025270 OES330259 2 2023-10-22 OER435860 OER_Xiaozhou_2310221412 OEX025270 OES330258 2 2023-10-22 OER435861 OER_Xiaozhou_2310221413 OEX025270 OES330260 2 2023-10-22 OER435862 OER_Xiaozhou_2310221414 OEX025270 OES330257 2 2023-10-22 OER435863 OER_Xiaozhou_2310221415 OEX025270 OES330193 2 2023-10-22 OER435864 OER_Xiaozhou_2310221416 OEX025270 OES330192 2 2023-10-22 OER435865 OER_Xiaozhou_2310221417 OEX025270 OES330256 2 2023-10-22 OER435866 OER_Xiaozhou_2310221418 OEX025270 OES330221 2 2023-10-22 OER435867 OER_Xiaozhou_2310221419 OEX025270 OES330263 2 2023-10-22 OER435868 OER_Xiaozhou_2310221421 OEX025270 OES330216 2 2023-10-22 OER435869 OER_Xiaozhou_2310221422 OEX025270 OES330217 2 2023-10-22 OER435870 OER_Xiaozhou_2310221423 OEX025270 OES330215 2 2023-10-22 OER435871 OER_Xiaozhou_2310221423 OEX025270 OES330235 2 2023-10-22 OER435872 OER_Xiaozhou_2310221424 OEX025270 OES330214 2 2023-10-22 OER435873 OER_Xiaozhou_2310221424 OEX025270 OES330213 2 2023-10-22 OER435874 OER_Xiaozhou_2310221425 OEX025270 OES330249 2 2023-10-22 OER435875 OER_Xiaozhou_2310221426 OEX025270 OES330232 2 2023-10-22 OER435876 OER_Xiaozhou_2310221426 OEX025270 OES330253 2 2023-10-22 OER435877 OER_Xiaozhou_2310221427 OEX025270 OES330244 2 2023-10-22 OER435878 OER_Xiaozhou_2310221428 OEX025270 OES330243 2 2023-10-22 OER435879 OER_Xiaozhou_2310221429 OEX025270 OES330252 2 2023-10-22 OER435880 OER_Xiaozhou_2310221429 OEX025270 OES330200 2 2023-10-22 OER435881 OER_Xiaozhou_2310221430 OEX025270 OES330237 2 2023-10-22 OER435883 OER_Xiaozhou_2310221431 OEX025270 OES330198 2 2023-10-22 OER435885 OER_Xiaozhou_2310221432 OEX025270 OES330251 2 2023-10-22 OER435888 OER_Xiaozhou_2310221433 OEX025270 OES330230 2 2023-10-22 OER435890 OER_Xiaozhou_2310221434 OEX025270 OES330254 2 2023-10-22 OER435891 OER_Xiaozhou_2310221435 OEX025270 OES330268 2 2023-10-22 OER435893 OER_Xiaozhou_2310221435 OEX025270 OES330266 2 2023-10-22 OER435897 OER_Xiaozhou_2310221436 OEX025270 OES330254 2 2023-10-22 OER435901 OER_Xiaozhou_2310221439 OEX025270 OES330190 1 2023-10-22 OER435906 OER_Xiaozhou_2310221442 OEX025270 OES330280 2 2023-10-22 OER435909 OER_Xiaozhou_2310221443 OEX025270 OES330245 1 2023-10-22 OER435916 OER_Xiaozhou_2310221447 OEX025270 OES330278 1 2023-10-22 OER435919 OER_Xiaozhou_2310221448 OEX025270 OES330288 2 2023-10-22 OER435921 OER_Xiaozhou_2310221449 OEX025270 OES330248 2 2023-10-22 OER435925 OER_Xiaozhou_2310221451 OEX025270 OES330276 1 2023-10-22 OER435928 OER_Xiaozhou_2310221452 OEX025270 OES330284 2 2023-10-22
Author Information
- Create Date
- 2023-10-17
- Last Modified
- 2024-02-21
- Submission
- Xiaozhou Pan
- Shanghai Children’s Hospital, School of Medicine, Shanghai Jiao Tong University