Genetics (Virtual Library: Biosciences)

Organism Index

Transgenic

• Transgenic Animal Web; contains Links to Useful Resources
• Transgenic/Targeted Mutation Database (Tbase)
• Transgenic and Targeted Mutant Animal Database

• Species 2000 has the objective of enumerating all known species of plants, animals, fungi and microbes on Earth as the baseline dataset for studies of global biodiversity.
• Livestock Genome Mapping (Iowa State)
• Veterinary Genetics Lab at the University of California, Davis
• TIGR databases
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)
• BIOSCI bionet Newsgroup Archives
• Report of the HUGO Comparative Genome Organization Workshop held on Frazer Island, Australia, December 1995; includes primate, mouse, marsupial
• Interactive Metabolic Reconstruction on the Web
• Model Organisms for Biomedical Research
• WWW Virtual Library:Developmental Biology
• WWW Virtual Library: Cell Biology
• WWW Virtual Library: Model Organisms
• WWW Virtual Library: Veterinary Medicine Animal see Health & Disease

• The C. elegans Genome Project World Wide Web Site
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)
• Caenorhabditis elegans WWW Server
• Strome Lab: researching maternal components required for the specification and development of a specific cell type using C. elegans
• Wadsworth's Wonderful Worms: a research laboratory studying developmental neurobiology and the extracellular matrix using Caenorhabditis elegans
• Washington University
• CELEGANS/bionet.celegans Newsgroup Archive

• USDA -Cattle Genome Mapping Project
• Mapping the Bovine Genome
• Japan Animal Genome Database (Cattle Cytogenetic Map)
• BoLA Nomenclature Committee: information source on the bovine major histocompatibility complex - its genes, proteins and polymorphism.
• Bovine Genome Database
• Gene Mapping, Laboratory of Immunogenetics at University of Illinois

Dog

• Dog Genome Project (Berkeley)
• Canine Research (University of California, Davis)
• FHCRC Dog Genome Project
• Canine Radiation Hybrid Mapping Project
• DogMap
• Microsatellite Loci for the Canine Genome

• The Drosophila Virtual Library
• Berkeley Drosophila Genome Project
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)
• DRES Database
• FlyBase
• FlyBrain
• FlyView
• The Sanger Centre

• Escherichia coli (E. coli) Genetic Stock Center
• E. coli Genome Center
• EcoCyc: Encyclopedia of E. coli Genes and Metabolism
• The E. coli Index (Part of the WWW Virtual Library)

• Puffer fish Fugu rubripes
• Zebrafish
  • FishNet, University of Oregon
  • Gilbert Lab, Harvard
  • Zebrafish Information Server, University of South Carolina

Frog

• WWW Virtual Library for Xenopus
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)

• Candida albicans
• Fungal Genome Resource (Aspergillus nidulans)
• Fungal Genetics Stock Center
• WWW VL Mycology: Fungal Molecular Genetics
• Yeasts

Microbial Genomes

• Archaeoglobus fulgidus from TIGR
• Bacillus subtilis
  • NRSub, a non-redundant database of Bacillus subtilis DNA sequence data; access from France
  • SubtiList: Bacillus subtilis
• Borrelia burgdorferi
  • Borrelia burgdorferi BNL Genome Sequencing Group
  • Borrelia burgdorferi from TIGR
• Caulobacter crescentus
• Clostridium acetobutylicum from Genome Therapeutics Corporation
• Haemophilus influenzae Rd from TIGR
• Helicobacter pylori from TIGR
• Methanobacterium thermoautotrophicum from Genome Therapeutics Corporation
• Methanococcus jannaschii (press release)
• Mycobacterium tuberculosis from Sanger
• Mycoplasma genitalium from TIGR
• Mycoplasma pneumoniae from ZMBH
• Pseudomonas Genome Project
• Synechocystis sp. PCC 6803 Synechocystis/CyanoBase
• The Sanger Center Projects has links to M. leprae, M. tuberculosis, N. meningitidis, P. falciparum, S. coelicolor, C. jejuni
• Beowulf Genomics
• Microbial Genomes from NCBI
• U.S. Dept. of Energy 2000 Microbial Genome Program Report
• U.S. Dept. of Energy Microbial Genome Program web site
• U.S. Dept. of Energy Microbial Cell Project web site
• GeneQuiz: Automated analysis of genomes: Synechocystis sp., Saccharomyces cerevisiae, Methanococcus jannaschii, Haemophilus influenzae, Mycoplasma genitalium
• Genome Catalog (17 different microbal genomes)
• Micado (formerly MadBase)
• The Institute for Genomic Research
  • The Institute for Genomic Research Microbial Database
• Organelle Evolution and Genomics
• GSC Bacterial Genome Sequencing Projects
• Microbial Genomes
• PEDANT

Nematodes

• Filarial Genome Network
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)

Parasites

• Parasite genome databases and genome research resources
• parasite-genome mailing list on computing aspects of parasite genome research
• Filarial Genome Network (or FilGenNet)

• Food and Agriculture Organization Seed and Plant Genetic Resources Service - AGPS
• Alga: Chlamydomonas Genetics Center
• CHLAMYDOMONAS/bionet.chlamydomonas Newsgroup Archive
• Arabidopsis thaliana
  • Arabidopsis thaliana Database (AtDB) (Stanford)
  • Arabinet (Massachusetts General Hospital)
  • Arabidopsis Information Management System (AIMS)
  • Arabidopsis thaliana genome sequencing at Genoscope
  • Plant Genetics at Cold Spring Harbor Laboratory
  • "Genes and Genomics, People and Plants: the Arabidopsis Sequencing Project," Cold Spring Harbor Laboratory, Harbor Transcript, vol. 15 no. 3/4, Fall/Winter 1997
  • Lehle Seeds: commercial site with lists of links to research sites
  • ARABIDOPSIS/bionet.genome.arabidopsis Newsgroup Archive
  • Nottingham Arabidopsis Stock Centre
  • Weeds World Arabidopsis Newsletter

    Nottingham, UK

    Stanford

  • TIGR Arabidopsis thaliana Database
  • Washington University Arabidopsis thaliana page
  • Yanofsky Lab Home Page: molecular genetics laboratory researching the molecular basis of flower development using Arabidopsis thaliana
• The BeanGenes Database: A Phaseolus/Vigna Database
• Forest Genetics and Tree Breeding (Virtual Library Subdirectory)
• U. Minnesota Computational Biology Centers
• GrainGenes: Wheat and other grains
• Maize (corn)
  • Maize Genome Database
  • Maize Genetics Cooperation - Stock Center
  • National Corn Genome Initiative
  • Plant Genetics at Cold Spring Harbor Laboratory
• National Plant Germplasm System
• National Plants Database Project
• Plant Genome Data and Information Center
• Plant Gene Register from The American Society of Plant Physiologists
• Plant Biotechnology Institute of the National Research Council, Canada
• Rice Genome Research Program
• United Kingdom Plant Genetic Resources Group
• Virtual Library: (Botany) Plant-Arrays

• U.S. Chicken Gene Mapping (Michigan State University)
• U.S. Livestock Genome Mapping (Iowa State)
• Mapping the Chicken Genome
• DT40: chicken EST sequences
• Chicken Genome Mapping Site of Wageningen University

• Mouse
  • European Collaborative Interspecific Mouse BackCross
  • C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)
  • Medical Research Council Mouse Genome Centre and Mammalian Genetics Unit at Harwell, UK
  • Genetic and Physical Maps of the Mouse Genome (Whitehead-MIT)
  • Genome Catalog
  • The Mouse Atlas and Gene Expression Database Project
  • Mouse Genome Informatics includes Mouse Genome Database (MGD) and Encyclopedia of the Mouse Genome (Jackson Labs)
    Mirror sites:
    • United Kingdom
    • Japan
  • Japan Animal Genome Database (Mouse Cytogenetic Map)
  • Mouse Genomic Resources University of Tennessee-Memphis
  • Mouse Knockout Database, part of BioMedNet
  • References for Gene Knockouts in Mice that Affect Nervous System Phenotypes and Function
  • ORNL Mutant Mouse Database
  • TIGR Mouse Gene Index
  • Tennessee Mouse Genome Consortium
  • Mouse BAC Sequencing Program
• Rat
  • MGH/MIT Genetic Map of the Rat
  • RATMAP: database of laboratory rat genes physically mapped to chromosomes
  • Rat strain information, lab code names

Swine

• PiGBASE: Pig genome database
• U.S. Livestock Genome Mapping (Iowa State)
• USDA - Swine Genome Mapping Project
• Japan Animal Genome Database (Pig Cytogenetic Map)
• Mapping the Pig Genome
• Cytogenetic map of the pig

• Genome Catalog: Saccharomyces cerevisiae
• C. elegans Network: Animal Bioinformatics & Research Menu Hubsite (Drosophila, mouse, nematodes, Xenopus, yeast)
• Saccharomyces Genome Database
• Saccharomyces cerevisiae Washington University
• NIH Campus Yeast Interest Group
• Yeast Sequencing (Sanger Centre)
• Virtual Library: Yeasts

Human Genome Project

Information -- U.S.

• Human Genome Project Information
• U.S. Department of Energy Human Genome Program
• U.S. National Institutes of Health National Human Genome Research Institute
• Human Genome Project Progress

U.S. Research Sites

• Allegheny-Singer Research Institute Department of Human Genetics
• Baylor College of Medicine Human Genome Center
• Columbia University Genome Center
• Cooperative Human Linkage Center (CHLC)
• Eleanor Roosevelt Institute (University of Colorado)
• GenBank -- National Center for Biotechnology Information
• Genome Catalog
• GenLink
• Genome Therapeutics Corporation Genome Sequencing Center
• Genome Sequence Data Base (GSDB at National Center for Genome Resources) (archive)
• Human Mitochondrial DNA
• DOE Joint Genome Institute, with participation of:
  • Lawrence Berkeley National Laboratory Genome Center
  • Lawrence Livermore National Laboratory Genome Center
  • Los Alamos National Laboratory Center for Human Genome Studies
• Marshfield Medical Research Foundation Center for Medical Genetics
• National Center for Genome Resources
• Pittsburgh Supercomputing Center Biomedical Supercomputing Initiative
• Resource for Molecular Cytogenetics (UCSF/LBL)
• Stanford Human Genome Center
• TelDB: GenLink Multimedia Telomere Resource
• TIGR - The Institute for Genomic Research
• University of Michigan Sequencing Core
• University of Oklahoma's Advanced Center for Genome Technology
• University of Pennsylvania's Computational Biology and Informatics Lab
• University of Texas Health Science Center at San Antonio Genome Center
• University of Victoria, Dr. Ben Koop's Lab
• University of Washington Department of Molecular Biotechnology
• Washington University Center for Genetics in Medicine
• Washington University Genome Sequencing Center
• Whitehead Institute Center for Genome Research (at MIT)

  　

International Research Sites

• The Human Genome Organisation (HUGO)
  • HUGO Pacific
  • Reports Archive
• World Health Organization Human Genetics
• United Kingdom
  • European BioInformatics Institute
  • Human Genome Mapping Project Resource (HGMP) - Hinxton Hall, UK
  • Sanger Center
  • Wellcome Laboratory for Molecular Genetics
• Australia
  • Australian National Genomic Information Server
  • Australian Genome Research Facility
  • WEHI (Walter and Eliza Hall Institute) - Melbourne, Australia
• Canada
  • Genome Canada
  • Queen's University Forsdyke Laboratory of Molecular Biology and Bioinformatics; X-Chromosome Dosage Compensation
• France
  • Fondation Jean Dausset Centre d'Etude du Polymorphisme Humain
  • INFOBIOGEN -Villejuif, France (in French)
  • Généthon
  Germany
  • DKFZ (German Cancer Research Center) - Heidelberg, Germany (in German)
  • European Molecular Biology Laboratory
  • Genome Sequencing Center at the Institute of Molecular Biotechnology (IMB) Jena
  • Max Planck Institute of Molecular Genetics
  • Department of Genome Analysis, GBF
• Japan
  • Human Genome Center University of Tokyo
  • Japan Science and Technology Corporation (JST) Human Genome Sequencing
  • GenomeNet
  • RIKEN Genomic Sciences Center
  • Kazusa DNA Research Institute
• Denmark
  • Danish Centre For Human Genome Research
• Israel
  • Weizmann Institute - Rehovot, Israel
• Italy
  • Telethon Institute for Genetics and Medicine
• Netherlands
  • Center for Molecular and Biomolecular Informatics
• Sri Lanka
  • Genetic Disorders and Birth Defects - Sri Lanka Collection
• University Programs
  • University of Pittsburgh Department of Molecular Genetics and Biochemistry

Human Chromosome-Specific Sites

• Human Chromosome Launchpad Links to Research Resources by Chromosome
• Genes by Chromosome Data Reports and Statistics
• Mitochondrial Chromosome (Emory University)
• Human Chromosome Specific Databases
• GenLink Human Chromosome-Specific Sites

• GDB 6.0 Web Server
• HUGO-GDB Chromosome Editors

Associated Sites:

• General
  
• Sequencing
  
• Mapping
  
• Instrumentation
  
• Informatics: Data Analysis, Databases
  
• Newsgroup Listings
  
• Biological Sciences
  
• Journals, Books, Periodicals
  
• University Programs
  
• Biotechnology
  
• Meetings
  
• Biological Resources
  
• Tools, Miscellaneous
  

• Ethical, Legal, Social Issues
  

• Education
  
• How Much? How Big?
  
• Support Groups
  
• Genetic Professions
  
• Gene Function, Mutations
  
• DNA Vaccine