系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV000273
发布时间:
2020-02-13
基因组完整性:
complete
病毒类型
RNA virus
毒株名称:
hCoV-19/pangolin/China/MP789/2019
毒株别名:
-
病毒说明:
hCoV-19/pangolin/China/MP789/2019
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
27213
有效碱基数量:
25341
有效碱基百分比:
93.12%
宿主:
Manis javanica
宿主补充信息:
-
分离来源:
Lung
测序技术:
Illumina
组装方法:
Megahit v. 1.2.9
覆盖度:
-
相关链接:
EPI_ISL_412860
提交者:
Jiang,J.-Z., Liu,P. and Chen,J.-P.
提交者单位:
SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS)
提交者地址:
231# Xingangxi Road, Haizhu District, Guangzhou, Guangdong 510300, China
样本信息
编号:
OESV000273
采样时间:
2019-03-19
采样地点:
Asia / China
地点补充信息:
-
采样单位:
SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS)
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020