系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV1470680
发布时间:
2021-04-27
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/dog/Germany/BY-MVP-000002394/2020
毒株别名:
-
病毒说明:
hCoV-19/dog/Germany/BY-MVP-000002394/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29782
有效碱基数量:
28036
有效碱基百分比:
94.14%
宿主:
Canis lupus familiaris
宿主补充信息:
-
分离来源:
Nasopharyngeal swab
测序技术:
Illumina Hiseq1500
组装方法:
ARTIC V3 amplicons, Nextera XT library, bwa v0.7.17, iVar v1.2.2
覆盖度:
904X
相关链接:
EPI_ISL_1751195
提交者:
Max Muenchhoff; Stefan Krebs; Alexander Graf; Oliver Keppler; Helmut Blum
提交者单位:
Laboratory for Functional Genome Analysis; Dept. Genomics; Gene Center of the LMU Munich
提交者地址:
Feodor-Lynen-Str. 25; 81377 Munich; Germany
样本信息
编号:
OESV1470680
采样时间:
2020-11-24
采样地点:
Europe / Germany / Bavaria / Munich
地点补充信息:
-
采样单位:
Max von Pettenkofer Institute, Virology, National Reference Center for Retroviruses, LMU Munich
采样地址:
Pettenkoferstr.9a;80336 Munich; Germany
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020