毒株信息
编号： OEAV15212978 发布时间： 2022-05-09 基因组完整性： partial
病毒类型
RNA viruses
毒株名称：
SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0790/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), and ORF3a protein (ORF3a) genes, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; and ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名：
-
病毒说明：
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/USA: South Dakota/USA/SD-SDAIHG-0790/2022 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), and ORF3a protein (ORF3a) genes, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; and ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称：
Severe acute respiratory syndrome coronavirus 2
物种ID：
2697049
属名：
Betacoronavirus
分类谱系：
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度：
29747
有效碱基数量：
28551
有效碱基百分比：
95.98%
宿主：
USA: South Dakota
宿主补充信息：
-
分离来源：
-
测序技术：
Illumina
组装方法：
DRAGEN COVIDSeq v. MAY-2022
覆盖度：
-
相关链接：
ON455055
提交者：
Johnson,B.N., Beck,J., Finnicum,C.T., Silvernail,C., Vaselaar,E., Kallsen,N., Long,K., Katz,C., Pfeifle,M., Nelson,L., Huizenga,P., Streier,Z., Viet,S., Davis,C., Petersen,J., Peta,V., Do,T., Agany,D.M., Hoffman,M., Cooper,L., McFadden,L., Huber,V., Gnimpieba,E.Z. and Ehli,E.A.
提交者单位：
Biomedical Engineering, University of South Dakota
提交者地址：
4800 N Career Ave, Sioux Falls, SD 57107, USA
样本信息
编号： OESV15212978 采样时间： 2022-01-03
病毒注释