系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV152890
发布时间:
2020-04-27
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/env/Beijing/BJ2456/2020
毒株别名:
-
病毒说明:
hCoV-19/env/Beijing/BJ2456/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29732
有效碱基数量:
29620
有效碱基百分比:
99.62%
宿主:
environmental samples
宿主补充信息:
-
分离来源:
Enviromental swab
测序技术:
Illumina Miseq
组装方法:
-
覆盖度:
3,828x
相关链接:
EPI_ISL_430745
提交者:
Peng Li,Jinhui Li, Lizhong Li
提交者单位:
Chinese PLA Institute for Disease Control and Prevention
提交者地址:
Dongda street 20#, Fengtai district, Beijing, China
样本信息
编号:
OESV152890
采样时间:
2020-03-14
采样地点:
Asia / China / Beijing
地点补充信息:
-
宿主编号:
-
宿主性别:
-
宿主年龄:
n/a
采样单位:
Chinese PLA Institute for Disease Control and Prevention
采样地址:
Dongda street 20#, Fengtai district, Beijing, China
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020