系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV172006
发布时间:
2020-05-15
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/env/USA/FL-UF11/2020
毒株别名:
-
病毒说明:
hCoV-19/env/USA/FL-UF11/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29894
有效碱基数量:
29894
有效碱基百分比:
100.00%
宿主:
environmental samples
宿主补充信息:
-
分离来源:
Door handle
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_447900
提交者:
Lednicky,J.A., Gibson,J.C., Alam,M.M., Stephenson,C.J., Elbadry,M.A. and Morris,J.G.
提交者单位:
University of Florida
提交者地址:
University of Florida - Gainesville, 1225 Center Drive, Room 4155, Gainesville, FL 32610, USA
样本信息
编号:
OESV172006
采样时间:
2020-02-21
采样地点:
North America / USA / Florida
地点补充信息:
-
采样单位:
Lednicky Laboratory at Emerging Pathogens Institute
采样地址:
2055 Mowry Rd. Gainesville, Florida Zip Code 32608
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020