系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV179578
发布时间:
2020-06-02
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/env/Italy/3233/2020
毒株别名:
-
病毒说明:
hCoV-19/env/Italy/3233/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
287
有效碱基数量:
287
有效碱基百分比:
100.00%
宿主:
environmental samples
宿主补充信息:
-
分离来源:
Raw sewage
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_458009
提交者:
La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E.
提交者单位:
Department of Food Safety
提交者地址:
Nutrition and Veterinary public health, Istituto Superiore di Sanita', v.le Regina Elena 299, Rome, RM 00161, Italy
样本信息
编号:
OESV179578
采样时间:
2020-02-28
采样地点:
Europe / Italy / Milan
地点补充信息:
-
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020