系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV210213
发布时间:
2020-05-04
基因组完整性:
partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/feline/USA/NYAD2/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) gene, complete cds; and ORF8 protein (ORF8) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/feline/USA/NYAD2/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) gene, complete cds; and ORF8 protein (ORF8) gene, partial cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
307
有效碱基数量:
307
有效碱基百分比:
100.00%
宿主:
Felis catus
宿主补充信息:
-
分离来源:
-
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
MT425184
提交者:
Leutenegger,C.M., Lozoya,C.E., Tereski,J.L. and Moroff,S.
提交者单位:
Molecular Diagnostics, Antech Diagnostics
提交者地址:
17620 Mt Herrmann Street, Fountain Valley, CA 92708, USA
样本信息
编号:
OESV210213
采样时间:
2020-04-06
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020