系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV2129751
发布时间:
2021-05-21
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/Canis lupus familiaris/ITA/Dog399-20BA/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Canis lupus familiaris/ITA/Dog399-20BA/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29876
有效碱基数量:
29876
有效碱基百分比:
100.00%
宿主:
Canis lupus familiaris
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
IonTorrent
组装方法:
Samtools v. November2020
覆盖度:
-
相关链接:
MW397523
提交者:
Di Bartolo,I., Vaccari,G. and De Sabato,L.
提交者单位:
Dept. Food safety
提交者地址:
Nutrition and Veterinary Public Health, Istituto Superiore di Sanita, Viale Regina Elena 299, Rome 00161, Italy
样本信息
编号:
OESV2129751
采样时间:
2020-11-04
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020