毒株信息
编号: OEAV2130472 发布时间: 2021-05-28 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/USA/AK-PHL8908/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/AK-PHL8908/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29775
有效碱基数量:
27707
有效碱基百分比:
93.05%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
Qiagen CLC v. MAY-2021
覆盖度:
-
相关链接:
提交者:
DeRonde,S., House,E., Zidek,J., Redlinger,M., Smith,L. and Chen,J.
提交者单位:
Alaska State Virology Lab, Alaska State Public Health Labs
提交者地址:
1051 Sheenjek Dr, Fairbanks, AK 99709, USA
样本信息
编号: OESV2130472 采样时间: 2021-05-14
病毒注释