毒株信息
编号: OEAV2133108 发布时间: 2021-05-28 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/USA/CT-CDCBI-CRSP_OXVATXY5NG552TC7/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CT-CDCBI-CRSP_OXVATXY5NG552TC7/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29830
有效碱基数量:
29735
有效碱基百分比:
99.68%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina NovaSeq 6000
组装方法:
Broad viral-ngs v. v2.1.28
覆盖度:
7093x
相关链接:
提交者:
Lemieux,J.E., Siddle,K.J., Shaw,B., Adams,G., Pierce,V., Turbett,S., Anahtar,M., Branda,J., Slater,D., Harris,J., Lin,A.E., Gladden-Young,A., Lagerborg,K., Rudy,M., DeRuff,K., Carter,A., Normandin,E., Bauer,M., Reilly,S., Tomkins-Tinch,C., Loreth,C., Chaluvadi,S., Neumann,A., Cusick,C., Chapman,S.B., Gnirke,A., Flowers,K., Cerrato,F., Birren,B.W., Gallagher,G., Smole,S., Park,D.J., MacInnis,B.L., Ryan,E., LaRocque,R., Rosenberg,E. and Sabeti,P.C.
提交者单位:
Infectious Disease Program, Broad Institute of Harvard and MIT
提交者地址:
75 Ames St, Cambridge, MA 02142, USA
样本信息
编号: OESV2133108 采样时间: 2021-05-16
病毒注释