系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV2178427
发布时间:
2021-05-25
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-61/2021
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-61/2021, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29876
有效碱基数量:
29876
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
saliva, oronasopharynx
测序技术:
Illumina
组装方法:
bowtie2 v. 2.4.2
覆盖度:
-
相关链接:
MZ277394
提交者:
Tsao,K.-C., Gong,Y.-N., Yang,S.-L., Huang,C.-G., Hsiao,M.-J., Huang,P.-W., Yang,C.-T., Chiu,C.-H., Huang,P.-N., Lee,K.-M., Chen,G.-W. and Shih,S.-R.
提交者单位:
Department of Laboratory Medicine, Lin-Kou Chang-Gung Memorial Hospital
提交者地址:
No. 5, Fu-Shing St., Taoyuan 333, Taiwan
样本信息
编号:
OESV2178427
采样时间:
2021-04-04
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020