系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV220009
发布时间:
2020-05-12
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/mink/NED/NB02_07KS/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/mink/NED/NB02_07KS/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29877
有效碱基数量:
29877
有效碱基百分比:
100.00%
宿主:
Mustela lutreola
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
custom :: reference based mapping v. 2020-05-04
覆盖度:
-
相关链接:
MT457396
提交者:
van der Poel,W.H.M., Hakze van der Honing,R.W. and Harders,F.
提交者单位:
Virology, Wageningen Bioveterinary Research, Houtribweg 39, Lelystad, Flevoland 8221 RA
提交者地址:
Nederland
样本信息
编号:
OESV220009
采样时间:
2020-04-29
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020