系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV220016
发布时间:
2020-04-24
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/tiger/NY/040420/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/tiger/NY/040420/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29897
有效碱基数量:
29897
有效碱基百分比:
100.00%
宿主:
Panthera tigris jacksoni
宿主补充信息:
-
分离来源:
oronasopharynx, oronasopharynx
测序技术:
Illumina; IonTorrent
组装方法:
iVar v. 1.1
覆盖度:
-
相关链接:
MT365033
提交者:
Mitchell,P., Anderson,R.R., Chilson,B., Venugopalan,R., Diel,D.G., Goodman,L., Wang,L., Yuan,F., Fang,Y., Killian,M.L., Franzen,K.M., Bergeson,N.H., Kuzmin,I., Jenkins-Moore,M. and Stuber,T.
提交者单位:
Diagnostic Virology Laboratory, USDA National Veterinary Services Laboratories
提交者地址:
1920 Dayton Avenue, Ames, IA 50010, USA
样本信息
编号:
OESV220016
采样时间:
2020-04-02
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020