系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV227315
发布时间:
2020-07-28
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCOV-19/England/SWG-MAR-nPCR1.4/2020
毒株别名:
-
病毒说明:
hCOV-19/England/SWG-MAR-nPCR1.4/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
714
有效碱基数量:
714
有效碱基百分比:
100.00%
宿主:
environmental samples
宿主补充信息:
-
分离来源:
Sewage
测序技术:
Sanger
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_499042
提交者:
Javier Martin, Dimitra Klapsa, Thomas Wilton
提交者单位:
National Institute for Biological Standards and Control (NIBSC)
提交者地址:
Division of Virology Blanche Lane, Potters Bar, Hertfordshire EN6 3QG, United Kingdom
样本信息
编号:
OESV227315
采样时间:
2020-03-11
采样地点:
Europe / United Kingdom / England
地点补充信息:
Sewage plant
采样单位:
National Institute for Biological Standards and Control (NIBSC)
采样地址:
Division of Virology Blanche Lane, Potters Bar, Hertfordshire EN6 3QG, United Kingdom
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020