系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV234181
发布时间:
2020-08-05
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Guatemala/CDC-1235/2020
毒株别名:
-
病毒说明:
hCoV-19/Guatemala/CDC-1235/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29882
有效碱基数量:
29882
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
nasopharyngeal swab
测序技术:
Oxford Nanopore
组装方法:
minimap 2.17
覆盖度:
20X
相关链接:
EPI_ISL_509702
提交者:
Ying Tao, Jing Zhang, Krista Queen, Anna Uehara, Yan Li, Clinton Paden, Haibin Wang, Suxiang Tong
提交者单位:
Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention
提交者地址:
1600 Clifton Rd NE, Atlanta GA 30329
样本信息
编号:
OESV234181
采样时间:
2020-03-20
采样地点:
North America / Guatemala
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
26
采样单位:
Guatemala Ministry of Public Health
采样地址:
3-45, Ga Avenida 3, In Hospital Roosevelt
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020