系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV235986
发布时间:
2020-08-09
基因组完整性:
partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/CHN/Meizhou/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) and ORF8 protein (ORF8) genes, complete cds; and nucleocapsid phosphoprotein (N) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/Meizhou/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) and ORF8 protein (ORF8) genes, complete cds; and nucleocapsid phosphoprotein (N) gene, partial cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
1387
有效碱基数量:
1387
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
MT860462
提交者:
Guo,X., Wu,H., Yu,Z. and Huang,Q.
提交者单位:
Center for Precision Medicine, Meizhou People's Hospital (Huangtang Hospital)
提交者地址:
No 63 Huangtang Road, Meijiang District, Meizhou, Guangdong 514031, China
样本信息
编号:
OESV235986
采样时间:
2020-02-02
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020