系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV236003
发布时间:
2020-08-07
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-USC-COM0001/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/SC-USC-COM0001/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29782
有效碱基数量:
29778
有效碱基百分比:
99.99%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Oxford Nanopore sequencing
组装方法:
artic minion v. artic-ncov2019
覆盖度:
-
相关链接:
MT856679
提交者:
Ji,H., Altomare,D., Cui,C.B., Chen,M., Clay-Glimour,A., Wyatt,M., Buckhaults,P., Albrecht,H. and Shtutman,M.
提交者单位:
College of Pharmacy, University of South Carolina
提交者地址:
715 Sumter Street, Columbia, SC 29208, USA
样本信息
编号:
OESV236003
采样时间:
2020-04-03
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020