系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV237363
发布时间:
2020-08-10
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/India/UT-AR26/2020
毒株别名:
-
病毒说明:
hCoV-19/India/UT-AR26/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29903
有效碱基数量:
29903
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
Patient infected while traveling
分离来源:
-
测序技术:
Illumina NovaSeq
组装方法:
CLC Genomics Workbench 20
覆盖度:
-
相关链接:
EPI_ISL_511908
提交者:
Arindam Maitra, Deepjyoti Kalita, Amit Mangla, Ravi Kant, Saumitra Das
提交者单位:
National Institute of Biomedical Genomics - DBT's PAN-INDIA 1000 SARS--CoV-2 RNA Genome Sequencing Consortium
提交者地址:
P.O.: N.S.S., Kalyani 741251, West Bengal, India
样本信息
编号:
OESV237363
采样时间:
2020-05-27
采样地点:
Asia / India / Uttarakhand / Haridwar
地点补充信息:
-
宿主编号:
-
宿主性别:
Male
宿主年龄:
7
采样单位:
All india institute of Medical Sciences Rishikesh
采样地址:
Virbhadra Road, Rishikesh, Uttarakhand- 249 203, India
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020