系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV238245
发布时间:
2020-07-03
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Germany/BY-UHR-1ZK/2020
毒株别名:
-
病毒说明:
hCoV-19/Germany/BY-UHR-1ZK/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29870
有效碱基数量:
29870
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Cell culture
测序技术:
Illumina
组装方法:
DRAGEN RNA Pathogen Detection v.: 3.5.14
覆盖度:
-
相关链接:
EPI_ISL_513298
提交者:
Fritsch,J., Holzmann,T., Schneider-Brachert,W.
提交者单位:
University Hospital Regensburg
提交者地址:
Franz-Josef-Strauss Allee 11, Regensburg 93053, Germany
样本信息
编号:
OESV238245
采样时间:
2020-03-18
采样地点:
Europe / Germany / Bavaria
地点补充信息:
-
采样单位:
Department of Infection Prevention and Infectious Diseases, University Hospital Regensburg
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020