系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV242540
发布时间:
2020-08-21
基因组完整性:
partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/environment/CHN/Yantai/2020 ORF1ab polyprotein (ORF1ab) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/environment/CHN/Yantai/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
1215
有效碱基数量:
1215
有效碱基百分比:
100.00%
宿主:
food contamination metagenome
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina
组装方法:
SOAPdenovo v. August-2020; Newbler v. August-2020
覆盖度:
-
相关链接:
MT911469
提交者:
Jiang,X., Yao,M., Zhang,Y., Li,Y. and Wang,J.
提交者单位:
Prevention and Control of Viral Infectious Diseases, Shandong Provincial Centers for Disease Control and Prevention
提交者地址:
16992 Jingshi Road, Jinan, Shandong 250000, China
样本信息
编号:
OESV242540
采样时间:
2020-08-14
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020