毒株信息
编号: OEAV282744 发布时间: 2020-09-29 基因组完整性: complete
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/Panthera tigris/USA/tiger-3-040420/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Panthera tigris/USA/tiger-3-040420/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29863
有效碱基数量:
29859
有效碱基百分比:
99.99%
宿主:
Panthera tigris
宿主补充信息:
-
分离来源:
feces
测序技术:
Illumina; IonTorrent; MinION
组装方法:
minimap2 v. 2.17
覆盖度:
-
相关链接:
提交者:
McAloose,D., Laverack,M., Wang,L., Killian,M.L., Cardia Caserta,L., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K. and Diel,D.G.
提交者单位:
Population Medicine and Diagnostic Sciences, Cornell University
提交者地址:
240 Farrier Rd, Ithaca, NY 14853, USA
样本信息
编号: OESV282744 采样时间: 2020-04-04
病毒注释