系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV305038
发布时间:
2020-10-15
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Iraq/ICGEB-5T/2020
毒株别名:
-
病毒说明:
hCoV-19/Iraq/ICGEB-5T/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29720
有效碱基数量:
29574
有效碱基百分比:
99.51%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Swab
测序技术:
Illumina Miseq
组装方法:
MEGAHIT v1.2.9
覆盖度:
5340x
相关链接:
EPI_ISL_582030
提交者:
Nihad Al-Rashedi, Danilo Licastro, Sreejith Rajasekharan, Simeone Dal Monego, Alessandro Marcello
提交者单位:
International Centre for Genetic Engineering and Biotechnology (ICGEB) and ARGO Open Lab Platform
提交者地址:
AREA Science Park PAdriciano, 99 34149 Trieste Italy
样本信息
编号:
OESV305038
采样时间:
2020-06-30
采样地点:
Asia / Iraq / Al-Muthanna Province
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
26
采样单位:
Biology Department, College of Science, Al-Muthanna University
采样地址:
Samawa, Iraq
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020