系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV306883
发布时间:
2020-10-18
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/env/Bangladesh/JUST-M5-44/2020
毒株别名:
-
病毒说明:
hCoV-19/env/Bangladesh/JUST-M5-44/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
187
有效碱基数量:
187
有效碱基百分比:
100.00%
宿主:
environmental samples
宿主补充信息:
Restaurant
分离来源:
Bangladeshi currency (10BDT) taken by swab
测序技术:
Sanger
组装方法:
-
覆盖度:
-
相关链接:
EPI_ISL_583539
提交者:
Selina Akter, Pravas Chandra Roy, Amina Ferdaus manami, Habiba Ibnat, A. S. M. Rubayet Ul Alam, Shireen Nigar, Iqbal Kabir Jahid, M.Anwar Hossain
提交者单位:
Genome Centre
提交者地址:
Jashore University of Science and Technology, Jashore-7408, Bangladesh
样本信息
编号:
OESV306883
采样时间:
2020-08-23
采样地点:
Asia / Bangladesh / Khulna
地点补充信息:
Jashore
采样单位:
Genome Centre
采样地址:
Jashore University of Science and Technology, Jashore-7408, Bangladesh
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020