系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV309341
发布时间:
2020-10-20
基因组完整性:
partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/IRN/K1r-81/2020 surface glycoprotein (S) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/IRN/K1r-81/2020 surface glycoprotein (S) gene, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
3822
有效碱基数量:
3822
有效碱基百分比:
100.00%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
MW136262
提交者:
Keyvani,H., Ranjbar,Mm., Keyvani,F. and Soleimani,S.
提交者单位:
Virology, Iran University of Medical Sciences
提交者地址:
Tehran Hemat Highway next to Milad Tower, Tehran, Tehran 14535, Iran
样本信息
编号:
OESV309341
采样时间:
2020-04-30
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020