毒株信息
编号: OEAV309350 发布时间: 2020-10-20 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/ITA/Siena_17/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/ITA/Siena_17/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29812
有效碱基数量:
26295
有效碱基百分比:
88.20%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Oxford Nanopore
组装方法:
Medaka v. 0.12.1
覆盖度:
-
相关链接:
提交者:
Cusi,M.G., Pinzauti,D., Gandolfo,C., Anichini,G., Pozzi,G. and Santoro,F.
提交者单位:
Dipartimento di Biotecnologie Mediche, University of Siena
提交者地址:
viale Bracci 16, Siena 53100, Italy
样本信息
编号: OESV309350 采样时间: 2020-05-08
病毒注释