系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV3556606
发布时间:
2021-08-23
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/Bangladesh/IEDCR-ideSHi-GSB07-005/2021
毒株别名:
-
病毒说明:
hCoV-19/Bangladesh/IEDCR-ideSHi-GSB07-005/2021
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29769
有效碱基数量:
29200
有效碱基百分比:
98.09%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
Nasopharyngeal swab
测序技术:
Nanopore MinION
组装方法:
Medaka v1.4
覆盖度:
-
相关链接:
EPI_ISL_3588249
提交者:
Hamza O, Rahman SIA, Das P, Hossain M, Khan MH, Saha S, Afrad MH, Rahman MZ, Jubair M, Hossain ME, Mazumder R, Islam MS, Alam AN, Alamgir ASM, Rahman M, Rahman M, Mondal D, Saha SK, Shirin T, Qadri F
提交者单位:
IEDCR-ideSHi Genomics Lab
提交者地址:
Mohakhali, Dhaka-1212, Bangladesh
样本信息
编号:
OESV3556606
采样时间:
2021-07-12
采样地点:
Asia / Bangladesh / Sylhet
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
80
采样单位:
Sylhet MAG Osmani Medical College, Sylhet
采样地址:
Medical College Rd, Sylhet, Bangladesh
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020