毒株信息
编号: OEAV3786799 发布时间: 2021-08-24 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP160/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/USA: Louisiana/USA/LA-BIE-BP160/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29743
有效碱基数量:
29137
有效碱基百分比:
97.96%
宿主:
USA: Louisiana
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
Bowtie v. 2.4.4
覆盖度:
-
相关链接:
提交者:
Lamers,S., Nolan,D., Rose,R., Murray,V. and Metzler,C.
提交者单位:
Pathogen Genomics, BioInfoExperts, LLC
提交者地址:
718 Bayou Lane, Thibodaux, LA 70301, USA
样本信息
编号: OESV3786799 采样时间: 2021-07-30
病毒注释