系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV406430
发布时间:
2020-11-17
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/dog/USA/TX-TAMU-077/2020
毒株别名:
-
病毒说明:
hCoV-19/dog/USA/TX-TAMU-077/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29834
有效碱基数量:
29834
有效碱基百分比:
100.00%
宿主:
Canis lupus familiaris
宿主补充信息:
-
分离来源:
Respiratory swab
测序技术:
IonTorrent
组装方法:
IRMA v. 0.6.7; SeqMan NGen v. 14
覆盖度:
-
相关链接:
EPI_ISL_699508
提交者:
Hamer,S.A., Pauvolid-Correa,A., Zecca,I.B., Davila,E., Auckland,L.D., Roundy,C.M., Tang,W., Torchetti,M., Killian,M.L., Jenkins-Moore,M., Akpalu,Y., Ghai,R.R., Spengler,J., Barton Behravesh,C., Fischer,R.S., Hamer,G.L., Franzen,K.M., Love,E.R.
提交者单位:
Diagnostic Virology Laboratory, USDA National Veterinary Services Laboratories
提交者地址:
1920 Dayton Avenue, Ames, IA 50010, USA
样本信息
编号:
OESV406430
采样时间:
2020-07-28
采样地点:
North America / USA / Texas / Brazos County
地点补充信息:
-
采样单位:
Diagnostic Virology Laboratory, USDA National Veterinary Services Laboratories
采样地址:
1920 Dayton Avenue, Ames, IA 50010, USA
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020