毒株信息
编号: OEAV416518 发布时间: 2020-12-18 基因组完整性: -
病毒类型
RNA virus
毒株名称:
hCoV-19/mink/Canada/A/2020
毒株别名:
-
病毒说明:
hCoV-19/mink/Canada/A/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29871
有效碱基数量:
29640
有效碱基百分比:
99.23%
宿主:
Neovison vison
宿主补充信息:
-
分离来源:
Oral swab
测序技术:
Nanopore GridION, ARTIC V3 protocol
组装方法:
Minimap2 reference mapping, Medaka/Longshot variant calling
覆盖度:
18,726x
相关链接:
提交者:
Oliver Lung, Asma Sultana, Peter Kruczkiewicz, Tomy Joseph, Brad Pickering
提交者单位:
National Centre for Foreign Animal Disease, Canadian Food Inspection Agency
提交者地址:
1015 Arlington Street, Winnipeg, Manitoba, R3E 3R2, Canada
样本信息
编号: OESV416518 采样时间: 2020-12-04
采样地点:
North America / Canada / British Columbia / Abbotsford
地点补充信息:
Mink farm
采样单位:
Animal Health Centre, British Columbia Ministry of Agriculture
采样地址:
1767 Angus Campbell Road, Abbotsford BC V3G 2M3