系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV416520
发布时间:
2020-12-18
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/mink/Canada/C/2020
毒株别名:
-
病毒说明:
hCoV-19/mink/Canada/C/2020
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
29843
有效碱基数量:
29602
有效碱基百分比:
99.19%
宿主:
Neovison vison
宿主补充信息:
-
分离来源:
Oral swab
测序技术:
Nanopore GridION, ARTIC V3 protocol
组装方法:
Minimap2 reference mapping, Medaka/Longshot variant calling
覆盖度:
18,765x
相关链接:
EPI_ISL_717716
提交者:
Oliver Lung, Asma Sultana, Peter Kruczkiewicz, Tomy Joseph, Brad Pickering
提交者单位:
National Centre for Foreign Animal Disease, Canadian Food Inspection Agency
提交者地址:
1015 Arlington Street, Winnipeg, Manitoba, R3E 3R2, Canada
样本信息
编号:
OESV416520
采样时间:
2020-12-04
采样地点:
North America / Canada / British Columbia / Abbotsford
地点补充信息:
Mink farm
采样单位:
Animal Health Centre, British Columbia Ministry of Agriculture
采样地址:
1767 Angus Campbell Road, Abbotsford BC V3G 2M3
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020