毒株信息
编号: OEAV424075 发布时间: 2020-12-27 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/HKG/43_0202/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/HKG/43_0202/2020 ORF1ab polyprotein (ORF1ab) gene, complete cds; ORF1a polyprotein (ORF1ab) gene, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29782
有效碱基数量:
28757
有效碱基百分比:
96.56%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
-
测序技术:
Illumina; Oxford Nanopore MinION
组装方法:
guppy_basecaller v. 3.4.5; porechop v. 0.2.4; bwa v. 0.7.17-r1188; samtools v. 1.7; medaka v. 0.11.5; artic-minion v. 2020-02-28; freebayes v. 1.0.0; GATK v. v4.1.4.1
覆盖度:
550X for Nanopore; 132X for MiSeq
相关链接:
提交者:
Leung,K.S.-S., Ng,T.T.-L., Wu,A.K.-L., Yau,M.C.-Y., Lao,H.-Y., Choi,M.-P., Tam,K.K.-G., Lee,L.-K., Wong,B.K.-C., Ho,A.Y.-M., Yip,K.-T., Lung,K.-C., Liu,R.W.-T., Tso,E.Y.-K., Leung,W.-S., Chan,M.-C., Fung,K.S.-C., Chau,S.K.-Y., To,W.-K., Que,T.-L.Q., Shum,D.H.-K., Yip,S.-P., Yam,W.C. and Siu,G.K.-H.
提交者单位:
Department of Health Technology and Informatics, Hong Kong Polytechnic University of Hong Kong
提交者地址:
Hung Hom, Hong Kong, Hong Kong
样本信息
编号: OESV424075 采样时间: 2020-02-10
病毒注释