毒株信息
编号: OEAV464551 发布时间: 2021-01-16 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/human/USA/CA-CDC-STM-070/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-070/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and truncated ORF8 protein (ORF8) genes, complete cds; nucleocapsid phosphoprotein (N) gene, partial cds; and ORF10 protein (ORF10) gene, complete cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29861
有效碱基数量:
29850
有效碱基百分比:
99.96%
宿主:
Homo sapiens
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
COVIDSeq v. V1
覆盖度:
-
相关链接:
提交者:
Cook,P.W., Batra,D., Rambo-Martin,B.L., de Feo,E., Antico,J., Tran,C., Tolentino,M., Wickline,S., Gietzen,K., Sickler,B., Liu,J., Allen,E., Febbo,P., Galloway,S., Washington,N.L., White,S., Levan,G., Barret,K.S., Cirulli,E., Bolze,A., Ascencio,A., Rivera-Garcia,C., Cho,R., Nguyen,J., Wang,S., Ramirez,J., Cassens,T., Sandoval,E., Isaksson,M., Lee,W., Becker,D., Laurent,M., Lu,J., Paden,C.R., Tong,S. and MacCannell,D.
提交者单位:
Respiratory Viruses Branch, Centers for Disease Control and Prevention
提交者地址:
1600 Clifton Rd, Atlanta, GA 30329, USA
样本信息
编号: OESV464551 采样时间: 2020-12-26
病毒注释