系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV591819
发布时间:
2021-02-16
基因组完整性:
complete
病毒类型
RNA viruses
毒株名称:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-40/2020
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-40/2020, complete genome
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29895
有效碱基数量:
29895
有效碱基百分比:
100.00%
宿主:
wastewater metagenome
宿主补充信息:
-
分离来源:
-
测序技术:
Sanger dideoxy sequencing
组装方法:
-
覆盖度:
-
相关链接:
MW605103
提交者:
Rainey,A., Bisesi,S.E., Loeb,J.C., Maurelli,A.T., Sabo-Attwood,T., Lednicky,J.A. and Bisesi,J.H.
提交者单位:
Environmental and Global Health, University of Florida
提交者地址:
2187 Mowry Road, Box 110885, Gainesville, FL 32611, USA
样本信息
编号:
OESV591819
采样时间:
2020-08-12
病毒注释
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020