毒株信息
编号: OEAV624820 发布时间: 2021-02-18 基因组完整性: partial
病毒类型
RNA viruses
毒株名称:
SARS-CoV-2/Neovison vison/USA/WI-CDC-CX2X-2436/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and ORF8 protein (ORF8) genes, complete cds; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes
毒株别名:
-
病毒说明:
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Neovison vison/USA/WI-CDC-CX2X-2436/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, complete cds; ORF3a protein (ORF3a) gene, partial cds; envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), and ORF8 protein (ORF8) genes, complete cds; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, partial cds
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
属名:
Betacoronavirus
分类谱系:
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度:
29823
有效碱基数量:
27043
有效碱基百分比:
90.68%
宿主:
Neovison vison
宿主补充信息:
-
分离来源:
oronasopharynx
测序技术:
Illumina
组装方法:
IRMA v. v.095-BETA
覆盖度:
-
相关链接:
提交者:
Zhang,J., Li,Y., Lynch,B., Tao,Y., Queen,K., Montmayeur,A., Uehara,A., Cook,P., Ng,H.J., Marine,R., Paden,C.R., Wang,H. and Tong,S.
提交者单位:
Respiratory Viruses Branch, Centers for Disease Control and Prevention
提交者地址:
1600 Clifton Rd, Atlanta, GA 30329, USA
样本信息
编号: OESV624820 采样时间: 2020-10-15
病毒注释