毒株信息
编号： OEAV859403 发布时间： 2021-03-14 基因组完整性： partial
病毒类型
RNA viruses
毒株名称：
SARS-CoV-2/Environment/NPL/GW14/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes
毒株别名：
-
病毒说明：
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Environment/NPL/GW14/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes, partial cds
物种名称：
Severe acute respiratory syndrome coronavirus 2
物种ID：
2697049
属名：
Betacoronavirus
分类谱系：
[root, Viruses, Riboviria, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus, Severe acute respiratory syndrome coronavirus 2]
序列长度：
29302
有效碱基数量：
17315
有效碱基百分比：
59.09%
宿主：
wastewater metagenome
宿主补充信息：
-
分离来源：
-
测序技术：
Illumina; MinION
组装方法：
Minimap v. MAY-2019
覆盖度：
-
相关链接：
MW739929
提交者：
Napit,R., Manandhar,P. and Karmacharya,D.
提交者单位：
One Health Research Division, Center for Molecular Dynamics Nepal, Thapathali-11, Kathmandu, Bagmati 44600
提交者地址：
Nepal
样本信息
编号： OESV859403 采样时间： 2020-11-11
病毒注释