系统分类
多序列联配
变异
论文
流行病学
病毒筛选
毒株信息
编号:
OEAV994376
发布时间:
2021-03-11
基因组完整性:
-
病毒类型
RNA virus
毒株名称:
hCoV-19/dog/Portugal/Dog42/2021
毒株别名:
-
病毒说明:
hCoV-19/dog/Portugal/Dog42/2021
物种名称:
Severe acute respiratory syndrome coronavirus 2
物种ID:
2697049
属名:
Betacoronavirus
分类谱系:
[Viruses, Riboviria, Orthornavirae, Pisuviricota, Pisoniviricetes, Nidovirales, Cornidovirineae, Coronaviridae, Orthocoronavirinae, Betacoronavirus, Sarbecovirus, Severe acute respiratory syndrome-related coronavirus]
序列长度:
346
有效碱基数量:
346
有效碱基百分比:
100.00%
宿主:
Canis lupus familiaris
宿主补充信息:
Asymptomatic dog cohabiting with SARS-CoV-2 positive owner
分离来源:
Nasopharyngeal swab
测序技术:
Sanger
组装方法:
CLC Genomics Workbench
覆盖度:
-
相关链接:
EPI_ISL_1220542
提交者:
Isabel Fidalgo Carvalho
提交者单位:
Equigerminal
提交者地址:
Urbanização Quinta da Portela, Rua Eduardo Correia, Nº13 3030-507 COIMBRA - PORTUGAL
样本信息
编号:
OESV994376
采样时间:
2021-01-29
采样地点:
Europe / Portugal / Coimbra
地点补充信息:
-
宿主编号:
-
宿主性别:
Female
宿主年龄:
4 years
采样单位:
Equigerminal
采样地址:
Urbanização Quinta da Portela, Rua Eduardo Correia, Nº13 3030-507 COIMBRA - PORTUGAL
NC_045512.2:28144:
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
->
GTAACATTAGGGAGGACTTGAAAGAGCCACCACATTTTCACCGAGGCCACGCGGAGTACGATCGAGTGTACAGTGAACAATGCTAGGGAGAGCTGCCTATATGGAAGAGCCCTAATGTGTAAAATTAATTTTAGTAGTGCTATCCCCATGTGATTTTAATAGCTTCTTAGGAGAATGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
×
以下
30
毒株也检测到该变异
virus id
virus name
host
country
Collection Date
OEAV000001
BetaCoV/Anhui/SZ005/2020