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病毒基因组
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基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV192113 hCoV-19/pangolin/Guangdong/A22-2/2019 EPI_ISL_471467 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 29825 2020-06-22 lung tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Wu Chen South China Agricultural University 29778 99.84
OEAV192114 hCoV-19/pangolin/Guangdong/FM45-9/2019 EPI_ISL_471468 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 29825 2020-06-22 muscle tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Wu Chen South China Agricultural University 27847 93.37
OEAV192115 hCoV-19/pangolin/Guangdong/SM44-9/2019 EPI_ISL_471469 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 29825 2020-06-22 Muscle tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Wu Chen South China Agricultural University 29356 98.43
OEAV192116 hCoV-19/pangolin/Guangdong/SM79-9/2019 EPI_ISL_471470 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 29825 2020-06-22 Muscle tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Wu Chen South China Agricultural University 29681 99.52
OEAV192117 hCoV-19/pangolin/Guangdong/cDNA16-S/2019 EPI_ISL_471463 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV192118 hCoV-19/pangolin/Guangdong/cDNA18-S/2019 EPI_ISL_471464 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV192119 hCoV-19/pangolin/Guangdong/cDNA20-S/2019 EPI_ISL_471465 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV192120 hCoV-19/pangolin/Guangdong/cDNA31-S/2019 EPI_ISL_471466 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV192121 hCoV-19/pangolin/Guangdong/cDNA8-S/2019 EPI_ISL_471461 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV192122 hCoV-19/pangolin/Guangdong/cDNA9-S/2019 EPI_ISL_471462 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-05-22 Manis javanica 3798 2020-06-22 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 3798 100.00
OEAV033839 Dongyang pangolin virus isolate DYCS MK636875 RNA viruses Dongyang pangolin virus China 2018-01-01 Manis javanica 12446 2020-03-02 kidney, abdominal cavity NCBI Virus/Genbank Gao,W.-H., Tan,Z.-Z., Chen,Y.-M. and Zhang,Y.-Z. Branch of Zoonosis, State Key Laboratory for Infectious Disease Prevention and Control 12412 99.73
OEAV000273 hCoV-19/pangolin/China/MP789/2019 EPI_ISL_412860 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2019-03-19 Manis javanica 27213 2020-02-27 Lung 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Jiang,J.-Z., Liu,P. and Chen,J.-P. SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS) 25341 93.12
OEAV000274 hCoV-19/pangolin/Guangdong/1/2019 EPI_ISL_410721 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-01-18 Manis javanica 29825 2020-02-18 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID South China Agricultural University 483 Wushan Road, Tianhe District, 510642 Guangzhou, China Yongyi Shen, Lihua Xiao, Wu Chen South China Agricultural University 29825 100.00
OEAV000275 hCoV-19/pangolin/Guangxi/P1E/2017 EPI_ISL_410539 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29801 2020-02-17 Intestine tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 29801 100.00
OEAV000276 hCoV-19/pangolin/Guangxi/P2V/2017 EPI_ISL_410542 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29795 2020-02-17 Mixed lung and intestine tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 29785 99.97
OEAV000277 hCoV-19/pangolin/Guangxi/P4L/2017 EPI_ISL_410538 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29806 2020-02-17 Lung tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 29805 100.00
OEAV000278 hCoV-19/pangolin/Guangxi/P5E/2017 EPI_ISL_410541 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29806 2020-02-17 Intestine tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 29802 99.99
OEAV000279 hCoV-19/pangolin/Guangxi/P5L/2017 EPI_ISL_410540 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29806 2020-02-17 Lung tissue 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 29806 100.00
OEAV143260 hCoV-19/pangolin/Guangdong/P2S/2019 EPI_ISL_410544 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2019-07-02 Manis javanica 29769 2020-02-17 Scale 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 21478 72.15
OEAV143261 hCoV-19/pangolin/Guangxi/P3B/2017 EPI_ISL_410543 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2017-07-02 Manis javanica 29801 2020-02-17 Blood 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Beijing Institute of Microbiology and Epidemiology 20 Dongda Street, Fengtai District, 100071 Beijing, China Wu-Chun Cao; Tommy Tsan-Yuk Lam; Na Jia; Ya-Wei Zhang; Jia-Fu Jiang; Bao-Gui Jiang Beijing Institute of Microbiology and Epidemiology 27360 91.81
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