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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV2129874 SARS-CoV-2/human/IND/Chennai/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ310552 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2021-04-12 Homo sapiens 29853 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank narasimhan,A.M. and greene,r.M. clinical research, sri ramachandra institute of higher education and research, ramachandra nagar, porur, Tamil Nadu 600116, India 29852 100.00
OEAV2129879 SARS-CoV-2/human/IND/GBRC562a/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ310510 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2020-12-15 Homo sapiens 29799 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Soni,T., Sharma,S., Saiyed,Z., Pandit,R., Raval,J., Patel,Z., Savaliya,N., Kumar,D., Desai,K.J., Mishra,U., Shah,N., Joshi,C. and Joshi,M. Department of Science and Technology, Gujarat Biotechnology Research Centre, MS Building, Block B & D 29799 100.00
OEAV2129880 SARS-CoV-2/human/IND/GBRC562b/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ310511 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2020-12-15 Homo sapiens 29799 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Sharma,S., Saiyed,Z., Pandit,R., Raval,J., Patel,Z., Savaliya,N., Kumar,D., Soni,T., Desai,K.J., Mishra,U., Shah,N., Joshi,C. and Joshi,M. Department of Science and Technology, Gujarat Biotechnology Research Centre, MS Building, Block B & D 29799 100.00
OEAV2129885 SARS-CoV-2/human/IRN/1/2021 surface glycoprotein (S) gene MZ312430 RNA viruses Severe acute respiratory syndrome coronavirus 2 Iran 2021-02-01 Homo sapiens 739 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karami,C., Ghorbani,M., Pahlavan,Y., Asgariazar,V., Safarzadeh,E., Jedi,F. and Tajmiri,A. Rahnozist KhalKhal, Rahnozist KhalKhal, Pasdaran St. 17 Shahrivar St., Khalkhal, Ardabil 5681964996, Iran 739 100.00
OEAV2129886 SARS-CoV-2/human/IRN/2/2021 surface glycoprotein (S) gene MZ312431 RNA viruses Severe acute respiratory syndrome coronavirus 2 Iran 2021-02-01 Homo sapiens 739 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karami,C., Ghorbani,M., Pahlavan,Y., Asgariazar,V., Safarzadeh,E., Jedi,F. and Tajmiri,A. Rahnozist KhalKhal, Rahnozist KhalKhal, Pasdaran St. 17 Shahrivar St., Khalkhal, Ardabil 5681964996, Iran 739 100.00
OEAV2129887 SARS-CoV-2/human/IRN/3/2021 surface glycoprotein (S) gene MZ312432 RNA viruses Severe acute respiratory syndrome coronavirus 2 Iran 2021-02-01 Homo sapiens 739 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karami,C., Ghorbani,M., Pahlavan,Y., Asgariazar,V., Safarzadeh,E., Jedi,F. and Tajmiri,A. Rahnozist KhalKhal, Rahnozist KhalKhal, Pasdaran St. 17 Shahrivar St., Khalkhal, Ardabil 5681964996, Iran 739 100.00
OEAV2129888 SARS-CoV-2/human/IRN/4/2021 surface glycoprotein (S) gene MZ312433 RNA viruses Severe acute respiratory syndrome coronavirus 2 Iran 2021-02-01 Homo sapiens 739 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karami,C., Ghorbani,M., Pahlavan,Y., Asgariazar,V., Safarzadeh,E., Jedi,F. and Tajmiri,A. Rahnozist KhalKhal, Rahnozist KhalKhal, Pasdaran St. 17 Shahrivar St., Khalkhal, Ardabil 5681964996, Iran 739 100.00
OEAV2129889 SARS-CoV-2/human/IRN/5/2021 surface glycoprotein (S) gene MZ312434 RNA viruses Severe acute respiratory syndrome coronavirus 2 Iran 2021-02-01 Homo sapiens 739 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karami,C., Ghorbani,M., Pahlavan,Y., Asgariazar,V., Safarzadeh,E., Jedi,F. and Tajmiri,A. Rahnozist KhalKhal, Rahnozist KhalKhal, Pasdaran St. 17 Shahrivar St., Khalkhal, Ardabil 5681964996, Iran 739 100.00
OEAV2130472 SARS-CoV-2/human/USA/AK-PHL8908/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313346 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-05-14 Homo sapiens 29775 2021-05-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank DeRonde,S., House,E., Zidek,J., Redlinger,M., Smith,L. and Chen,J. Alaska State Virology Lab, Alaska State Public Health Labs 27707 93.05
OEAV2133104 SARS-CoV-2/human/USA/CT-CDCBI-CRSP_IM4LFWC6K7RZVBUJ/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ310916 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-05-17 Homo sapiens 29830 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lemieux,J.E., Siddle,K.J., Shaw,B., Adams,G., Pierce,V., Turbett,S., Anahtar,M., Branda,J., Slater,D., Harris,J., Lin,A.E., Gladden-Young,A., Lagerborg,K., Rudy,M., DeRuff,K., Carter,A., Normandin,E., Bauer,M., Reilly,S., Tomkins-Tinch,C., Loreth,C., Chaluvadi,S., Neumann,A., Cusick,C., Chapman,S.B., Gnirke,A., Flowers,K., Cerrato,F., Birren,B.W., Gallagher,G., Smole,S., Park,D.J., MacInnis,B.L., Ryan,E., LaRocque,R., Rosenberg,E. and Sabeti,P.C. Infectious Disease Program, Broad Institute of Harvard and MIT 4400x 29266 98.11
OEAV2133108 SARS-CoV-2/human/USA/CT-CDCBI-CRSP_OXVATXY5NG552TC7/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ310917 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-05-16 Homo sapiens 29830 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lemieux,J.E., Siddle,K.J., Shaw,B., Adams,G., Pierce,V., Turbett,S., Anahtar,M., Branda,J., Slater,D., Harris,J., Lin,A.E., Gladden-Young,A., Lagerborg,K., Rudy,M., DeRuff,K., Carter,A., Normandin,E., Bauer,M., Reilly,S., Tomkins-Tinch,C., Loreth,C., Chaluvadi,S., Neumann,A., Cusick,C., Chapman,S.B., Gnirke,A., Flowers,K., Cerrato,F., Birren,B.W., Gallagher,G., Smole,S., Park,D.J., MacInnis,B.L., Ryan,E., LaRocque,R., Rosenberg,E. and Sabeti,P.C. Infectious Disease Program, Broad Institute of Harvard and MIT 7093x 29735 99.68
OEAV2133113 SARS-CoV-2/human/USA/CT-CDCBI-CRSP_WGUUWM7EWFCTZNV6/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ310918 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-05-16 Homo sapiens 29855 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lemieux,J.E., Siddle,K.J., Shaw,B., Adams,G., Pierce,V., Turbett,S., Anahtar,M., Branda,J., Slater,D., Harris,J., Lin,A.E., Gladden-Young,A., Lagerborg,K., Rudy,M., DeRuff,K., Carter,A., Normandin,E., Bauer,M., Reilly,S., Tomkins-Tinch,C., Loreth,C., Chaluvadi,S., Neumann,A., Cusick,C., Chapman,S.B., Gnirke,A., Flowers,K., Cerrato,F., Birren,B.W., Gallagher,G., Smole,S., Park,D.J., MacInnis,B.L., Ryan,E., LaRocque,R., Rosenberg,E. and Sabeti,P.C. Infectious Disease Program, Broad Institute of Harvard and MIT 5529x 29855 100.00
OEAV2133116 SARS-CoV-2/human/USA/CT-CDCBI-CRSP_YGMFM23AO2UTFNOB/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), truncated ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ310919 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-05-17 Homo sapiens 29830 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Lemieux,J.E., Siddle,K.J., Shaw,B., Adams,G., Pierce,V., Turbett,S., Anahtar,M., Branda,J., Slater,D., Harris,J., Lin,A.E., Gladden-Young,A., Lagerborg,K., Rudy,M., DeRuff,K., Carter,A., Normandin,E., Bauer,M., Reilly,S., Tomkins-Tinch,C., Loreth,C., Chaluvadi,S., Neumann,A., Cusick,C., Chapman,S.B., Gnirke,A., Flowers,K., Cerrato,F., Birren,B.W., Gallagher,G., Smole,S., Park,D.J., MacInnis,B.L., Ryan,E., LaRocque,R., Rosenberg,E. and Sabeti,P.C. Infectious Disease Program, Broad Institute of Harvard and MIT 4199x 29618 99.29
OEAV2134999 SARS-CoV-2/human/USA/GA-EHC-248P/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313115 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-05-06 Homo sapiens 29706 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29704 99.99
OEAV2135000 SARS-CoV-2/human/USA/GA-EHC-249Q/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313099 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-05-06 Homo sapiens 29685 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29665 99.93
OEAV2135001 SARS-CoV-2/human/USA/GA-EHC-263E/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ312960 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-05-09 Homo sapiens 29867 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29863 99.99
OEAV2135002 SARS-CoV-2/human/USA/GA-EHC-273O/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313068 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-05-13 Homo sapiens 29685 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29682 99.99
OEAV2135003 SARS-CoV-2/human/USA/GA-EHC-491Y/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; and ORF1a polyprotein (ORF1ab) gene MZ313128 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-08-02 Homo sapiens 20828 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 20828 100.00
OEAV2135004 SARS-CoV-2/human/USA/GA-EHC-690P/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313104 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-27 Homo sapiens 29685 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29685 100.00
OEAV2135005 SARS-CoV-2/human/USA/GA-EHC-720T/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ313125 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-01-08 Homo sapiens 29685 2021-05-28 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Piantadosi,A., Babiker,A., Sheth,M., Nobles,S., Padilla,J., Burroughs,M., Davis,M., Cook,P., Paden,C.R., Batra,D., Knipe,K., Howard,D., Unoarumhi,Y., Schmerer,M., Rambo-Martin,B.L., Lacek,K., Shepard,S., Laufer Halpin,A., Wentworth,D., Dugan,V. and Lee,J. Division of Viral Diseases, CDC Pathogen Discovery Team 29680 99.98
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