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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV178753 hCoV-19/Iran/SARS-COV2:2415Kerman/2020 EPI_ISL_456408 RNA virus Severe acute respiratory syndrome coronavirus 2 Iran 2020-03-25 Homo sapiens 222 2020-06-01 Nasal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Mollaei,H.R., Aghaei-Afshar,A., Kalantar-Neyestanaki,D. Research Center Of Tropical and Infectious Of Medical Sciences 222 100.00
OEAV120991 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/WA2/human/2020/USA MT152824 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-02-24 Homo sapiens 29878 2020-03-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Chu,H., Boeckh,M., Englund,J., Famulare,M., Lutz,B., Nickerson,D., Rieder,M., Starita,L., Thompson,M., Shendure,J. and Bedford,T. Seattle Flu Study, University of Washington Medical Center 184x (average) 29878 100.00
OEAV120982 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/105/human/2020/CHN MT135041 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-26 Homo sapiens 29903 2020-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,J., Li,L., Li,Z., Qiu,S., Song,H., Li,P. and Li,P. Infectious Disease Control Center, Center for Disease Control and Prevention of PLA 29903 100.00
OEAV120983 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/231/human/2020/CHN MT135042 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-28 Homo sapiens 29903 2020-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,J., Li,L., Li,Z., Qiu,S., Song,H., Li,P. and Li,P. Infectious Disease Control Center, Center for Disease Control and Prevention of PLA 29903 100.00
OEAV120984 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/233/human/2020/CHN MT135043 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-28 Homo sapiens 29903 2020-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,J., Li,L., Li,Z., Qiu,S., Song,H., Li,P. and Li,P. Infectious Disease Control Center, Center for Disease Control and Prevention of PLA 29903 100.00
OEAV120985 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/235/human/2020/CHN MT135044 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-28 Homo sapiens 29903 2020-03-04 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,J., Li,L., Li,Z., Qiu,S., Song,H., Li,P. and Li,P. Infectious Disease Control Center, Center for Disease Control and Prevention of PLA 29903 100.00
OEAV120990 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/SP02/human/2020/BRA MT126808 RNA viruses Severe acute respiratory syndrome coronavirus 2 Brazil 2020-02-28 Homo sapiens 29876 2020-03-02 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Amgarten,D., Malta,F., Ruiz,R.M., Petroni,R., Santana,R.A.F., de Menezes,F.G., Mangueira,C.L.P. and Pinho,J.R.R. Clinical Laboratory, Hospital Israelita Albert Einstein, Av. Albert Einstein 1186x 29876 100.00
OEAV120986 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/IQTC01/human/2020/CHN MT123290 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-05 Homo sapiens 29891 2020-02-28 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Shi,Y., Sun,J., Zheng,K., Huang,J. and Zhao,J. Technology Centre, Guangzhou Customs, Guangzhou Customs 29891 100.00
OEAV120987 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/IQTC02/human/2020/CHN MT123291 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-29 Homo sapiens 29927 2020-02-28 lung 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Shi,Y., Zheng,K., Sun,J., Huang,J., Zhu,A., Zhuang,Z., Dai,J., Chen,Z., Sun,F., Zhang,Z., Li,X. and Wang,Y. Technology Centre, Guangzhou Customs, Guangzhou Customs 29927 100.00
OEAV121001 Severe acute respiratory syndrome-related coronavirus isolate SARS-CoV-2/IQTC03/human/2020/CHN MT123293 RNA viruses Severe acute respiratory syndrome-related coronavirus China 2020-01-29 Homo sapiens 29929 2020-02-28 feces 694009 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Zheng,K., Shi,Y., Sun,J., Huang,J., Zhu,A., Sun,F., Zhuang,Z., Dai,J., Chen,Z., Huang,S., Zhang,Z., Li,X. and Wang,Y. Technology Centre, Guangzhou Customs, Guangzhou Customs 29929 100.00
OEAV121002 Severe acute respiratory syndrome-related coronavirus isolate SARS-CoV-2/IQTC04/human/2020/CHN MT123292 RNA viruses Severe acute respiratory syndrome-related coronavirus China 2020-01-27 Homo sapiens 29981 2020-02-28 lung, oronasopharynx 694009 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Huang,J., Shi,Y., Sun,J., Zheng,K., Zhu,A., Sun,F., Zhuang,Z., Dai,J., Zhang,Z., Huang,S., Wang,Y. and Li,X. Technology Centre, Guangzhou Customs, Guangzhou Customs 29981 100.00
OEAV120981 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/01/human/2020/SWE MT093571 RNA viruses Severe acute respiratory syndrome coronavirus 2 Sweden 2020-02-07 Homo sapiens 29886 2020-02-21 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bengner,M., Palmerus,M., Lindsjo,O., Lind Karlberg,M., Monteil,V., Appelberg,S., Brave,A., Muradrasoli,S. and Tegmark-Wisell,K. Unit for Laboratory Development and Technology Transfer, Public Health Agency of Sweden, Folkhalsomyndigheten, Tomtebodavagen 12 B, Solna, Uppland 17165, Sweden 100X 29886 100.00
OEAV120992 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/WH-09/human/2020/CHN MT093631 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-08 Homo sapiens 29911 2020-02-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Linlin,B., Lili,R., Shuran,G., Jiangning,L., Feifei,Q., Qi,L., Fengdi,L., Jing,X., Wei,D., Pin,Y., Yanfeng,X., Yajin,Q., Hong,G., Qiang,W., Mingya,L., Guanpeng,W., Shunyi,W., Zhiqi,S., Li,G., Lan,C., Conghui,W., Ying,W., Xinming,W., Yan,X., Qi,J. and Chuan,Q. Key Laboratory of Human Diseases Comparative Medicine, Institute of Laboratory Animal Science 29911 100.00
OEAV118821 SARS0CoV-2/61-TW/human/2020/ NPL MT072688 RNA viruses Severe acute respiratory syndrome coronavirus 2 Nepal 2020-01-13 Homo sapiens 29811 2020-02-18 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Sah,R., Jha,R., Chu,D., Gu,H., Peiris,M., Bastola,A., Rodriguez-Morales,A.J., Lal,B.K., Pandey,B.D. and Poon,L. Public Health and Infection Research Group, Faculty of Health Sciences, Universidad Tecnologica de Pereira 29811 100.00
OEAV120988 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/NTU01/2020/TWN MT066175 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-31 Homo sapiens 29870 2020-02-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Yeh,S.-H., Lin,Y.-Y., Lai,Y.-Y., Li,C.-L., Chang,S.-C., Chen,P.-J. and Chang,S.-Y. Microbial Genomics Core Lab, Centers of Genomic and Precision Medicine 29870 100.00
OEAV120989 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/NTU02/2020/TWN MT066176 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-02-05 Homo sapiens 29870 2020-02-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Yeh,S.-H., Lin,Y.-Y., Lai,Y.-Y., Li,C.-L., Chang,S.-C., Chen,P.-J. and Chang,S.-Y. Graduate Institute of Clinical Medicine 29870 100.00
OEAV120993 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Yunnan-01/human/2020/CHN MT049951 RNA viruses Severe acute respiratory syndrome coronavirus 2 China 2020-01-17 Homo sapiens 29903 2020-02-12 lung, oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Fu,X., Li,D. and Sun,Y. Yunnan Center for Disease Control Prevention, Institute for Acute Communicable Disease Prevention and Control 29903 100.00
OEAV118756 SARS coronavirus Urbani isolate icSARS MK062179 RNA viruses SARS coronavirus Urbani United States 2017-05-27 Homo sapiens 29727 2018-11-21 228330 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Graham,R.L., Deming,D.J., Deming,M.E., Yount,B.L. and Baric,R.S. Epidemiology, University of North Carolina at Chapel Hill 29727 100.00
OEAV118757 SARS coronavirus Urbani isolate icSARS-C3 MK062181 RNA viruses SARS coronavirus Urbani United States 2017-05-29 Homo sapiens 29727 2018-11-21 228330 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Graham,R.L., Deming,D.J., Deming,M.E., Yount,B.L. and Baric,R.S. Epidemiology, University of North Carolina at Chapel Hill 29727 100.00
OEAV118758 SARS coronavirus Urbani isolate icSARS-C3-MA MK062182 RNA viruses SARS coronavirus Urbani United States 2017-05-30 Homo sapiens 29727 2018-11-21 228330 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Graham,R.L., Deming,D.J., Deming,M.E., Yount,B.L. and Baric,R.S. Epidemiology, University of North Carolina at Chapel Hill 29727 100.00
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