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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV2129752 SARS-CoV-2/Dog/ESP/B.1.1.7/2021 surface glycoprotein (S) gene MZ299152 RNA viruses Severe acute respiratory syndrome coronavirus 2 Spain 2021-03-24 Canis lupus familiaris 3813 2021-05-27 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barroso-Arevalo,S., Rivera,B., Sanchez,R. and Sanchez-Vizcaino,J.M. Animal Health, Complutense University of Madrid 3813 100.00
OEAV2129751 SARS-CoV-2/Canis lupus familiaris/ITA/Dog399-20BA/2020 MW397523 RNA viruses Severe acute respiratory syndrome coronavirus 2 Italy 2020-11-04 Canis lupus familiaris 29876 2021-05-21 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Di Bartolo,I., Vaccari,G. and De Sabato,L. Dept. Food safety 29876 100.00
OEAV1470954 SARS-CoV-2/Canis lupus familiaris/ESP/941000012297834/2021 surface glycoprotein (S) gene MW872017 RNA viruses Severe acute respiratory syndrome coronavirus 2 Spain 2021-01-01 Canis lupus familiaris 399 2021-05-06 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Padilla-Blanco,M. Pharmacy, Universidad CEU Cardenal Herrera 399 100.00
OEAV1470679 hCoV-19/dog/Germany/BY-MVP-000002393/2020 EPI_ISL_1751194 RNA virus Severe acute respiratory syndrome coronavirus 2 Germany 2020-11-24 Canis lupus familiaris 29611 2021-04-27 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Max von Pettenkofer Institute, Virology, National Reference Center for Retroviruses, LMU Munich Pettenkoferstr.9a;80336 Munich; Germany Max Muenchhoff; Stefan Krebs; Alexander Graf; Oliver Keppler; Helmut Blum Laboratory for Functional Genome Analysis; Dept. Genomics; Gene Center of the LMU Munich 921X 26637 89.96
OEAV1470680 hCoV-19/dog/Germany/BY-MVP-000002394/2020 EPI_ISL_1751195 RNA virus Severe acute respiratory syndrome coronavirus 2 Germany 2020-11-24 Canis lupus familiaris 29782 2021-04-27 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Max von Pettenkofer Institute, Virology, National Reference Center for Retroviruses, LMU Munich Pettenkoferstr.9a;80336 Munich; Germany Max Muenchhoff; Stefan Krebs; Alexander Graf; Oliver Keppler; Helmut Blum Laboratory for Functional Genome Analysis; Dept. Genomics; Gene Center of the LMU Munich 904X 28036 94.14
OEAV1470681 hCoV-19/dog/Germany/BY-MVP-000002395/2020 EPI_ISL_1751196 RNA virus Severe acute respiratory syndrome coronavirus 2 Germany 2020-11-24 Canis lupus familiaris 29611 2021-04-27 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Max von Pettenkofer Institute, Virology, National Reference Center for Retroviruses, LMU Munich Pettenkoferstr.9a;80336 Munich; Germany Max Muenchhoff; Stefan Krebs; Alexander Graf; Oliver Keppler; Helmut Blum Laboratory for Functional Genome Analysis; Dept. Genomics; Gene Center of the LMU Munich 819X 26464 89.37
OEAV1470682 hCoV-19/dog/Germany/BY-MVP-000003828/2020 EPI_ISL_1750982 RNA virus Severe acute respiratory syndrome coronavirus 2 Germany 2020-11-24 Canis lupus familiaris 29818 2021-04-27 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Max von Pettenkofer Institute, Virology, National Reference Center for Retroviruses, LMU Munich Pettenkoferstr.9a;80336 Munich; Germany Max Muenchhoff; Stefan Krebs; Alexander Graf; Oliver Keppler; Helmut Blum Laboratory for Functional Genome Analysis; Dept. Genomics; Gene Center of the LMU Munich 1995X 29096 97.58
OEAV1470683 hCoV-19/dog/Spain/UCH-CEU-941000012297834/2021 EPI_ISL_1490671 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2021-01-25 Canis lupus familiaris 399 2021-04-06 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Pharmacy Department, Facultad de CC Salud, UCH-CEU University C/Ramon y Cajal s/n, 46113 Alfara del Patriarca, Spain Miguel Padilla-Blanco Pharmacy Department, Facultad de CC Salud, UCH-CEU University 399 100.00
OEAV1130654 hCoV-19/dog/USA/TX-TAMU-21-005988-002-466/2020 EPI_ISL_1315074 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-12 Canis lupus familiaris 29784 2021-03-23 Oral swab (PCR Cts~28-29) 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Texas A&M College of Veterinary Medicine & Biomedical Sciences via Wisconsin Veterinary Diagnostic Laboratory, University of Wisconsin-Madison Texas A&M College of Veterinary Medicine & Biomedical Sciences, 4461 TAMU, College Station, TX 77843-4461 Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Sarah A. Hamer, Gabriel L. Hamer, Ria R. Ghai, Casey Barton Behravesh, Ailam Lim Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 2,741.96x (median) 29784 100.00
OEAV1061293 hCoV-19/dog/USA/CT-CVMDL-1/2021 EPI_ISL_1241386 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-12 Canis lupus familiaris 29869 2021-03-15 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Connecticut Veterinary Medical Diagnostic Laboratory 61 North Eagleville Rd. Unit 3089, Storrs, CT 06269, USA Dong-Hun Lee, Zeinab H. Helal, Junwon Kim, Amelia Hunt, Alyza Barbieri, Ji-yeon Hyeon, David H. Chung, Guillermo Risatti Department of Pathobiology, University of Connecticut 10,054x 29869 100.00
OEAV994376 hCoV-19/dog/Portugal/Dog42/2021 EPI_ISL_1220542 RNA virus Severe acute respiratory syndrome coronavirus 2 Portugal 2021-01-29 Canis lupus familiaris 346 2021-03-11 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Equigerminal Urbanização Quinta da Portela, Rua Eduardo Correia, Nº13 3030-507 COIMBRA - PORTUGAL Isabel Fidalgo Carvalho Equigerminal 346 100.00
OEAV567953 hCoV-19/dog/Brazil/RJ-A016NS3/2020 EPI_ISL_848076 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-07-02 Canis lupus familiaris 416 2021-01-19 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 416 100.00
OEAV567954 hCoV-19/dog/Brazil/RJ-A119/2020 EPI_ISL_848074 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-07-15 Canis lupus familiaris 410 2021-01-19 Retal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 410 100.00
OEAV567955 hCoV-19/dog/Brazil/RJ-A398/2020 EPI_ISL_848078 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-10-01 Canis lupus familiaris 406 2021-01-19 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 406 100.00
OEAV567956 hCoV-19/dog/Brazil/RJ-A399/2020 EPI_ISL_848079 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-10-02 Canis lupus familiaris 406 2021-01-19 Retal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 406 100.00
OEAV567957 hCoV-19/dog/Brazil/RJ-A401/2020 EPI_ISL_848080 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-10-03 Canis lupus familiaris 402 2021-01-19 Retal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 402 100.00
OEAV567958 hCoV-19/dog/Brazil/RJ-A403/2020 EPI_ISL_848081 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-10-01 Canis lupus familiaris 366 2021-01-19 Retal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 366 100.00
OEAV567959 hCoV-19/dog/Brazil/RJ-A404/2020 EPI_ISL_848082 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-10-02 Canis lupus familiaris 255 2021-01-19 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 255 100.00
OEAV789004 hCoV-19/dog/Brazil/RJ-A004N/2020 EPI_ISL_848072 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-05-28 Canis lupus familiaris 686 2021-01-19 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 686 100.00
OEAV789005 hCoV-19/dog/Brazil/RJ-A118/2020 EPI_ISL_848073 RNA virus Severe acute respiratory syndrome coronavirus 2 Brazil 2020-07-15 Canis lupus familiaris 665 2021-01-19 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Laboratory of Clinical Research on Dermatozoonoses in Domestic Animals, Evandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation (Fiocruz), Rio de Janeiro, RJ, Brazil. Av. Brasil, 4365 - Manguinhos, Rio de Janeiro - RJ, CEP 21040-900, Brazil Guilherme Amaral Calvet, Michelle Fernanda Borges da Silva, Anielle de Pina Costa, Ezequias Batista Martins, Isabella Campos Vargas de Moraes, Lusiele Guaraldo, Patrícia Brasil, Sandro Antônio Pereira, Rodrigo Caldas Menezes, Isabella Dib Ferreira Gremião, Lucas Oliveira Keidel, Shanna Araujo dos Santos, Artur Augusto Velho Mendes Junior, Renato Orsini Ornellas, Maria Ogrzewalska, Paola Cristina Resende, Alex Pauvolid-Corrêa, Fernando do Couto Motta, Alice Sampaio Barreto da Rocha, Thiago C. Souza, Marilda Mendonça Siqueira Laboratory of Respiratory Viruses and Measles, Oswaldo Cruz Institute, FIOCRUZ 665 100.00
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