Virus Genome Toolkits

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毒株（基因组编号/引用编号/毒株名称）

分类（物种ID/物种名称/科属种名）

序列长度:

-

有效碱基百分比:

%

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%

病毒宿主:

数据来源:

采样时间:

-

采样国家:

NCBI RefSeq

推荐 SARS-CoV-2基因组

病毒基因组

	基因组编号	毒株名称	引用编号	病毒类型	物种名称	采样国家	采样时间	宿主	序列长度	发布时间	分离来源	物种ID	种名	属名	科名	数据源	采样单位	采样地址	提交者	提交者单位	覆盖度	有效碱基数量	有效碱基百分比
	OEAV270060	hCoV-19/cat/England/CVR-Cat2/2020	EPI_ISL_536400	RNA virus	Severe acute respiratory syndrome coronavirus 2	United Kingdom	2020-05-02	Felis catus	29782	2020-09-15		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID	Fareham Creek Veterinary Surgery	Fareham Creek Veterinary Surgery, 32 East Street, Fareham, Hampshire, PO16 0BY	Margaret J Hosie, Ilaria Epifano, Vanessa Herder, Richard J Orton, Andrew Stevenson, Natasha Johnson, Daniel Goldfarb, Emma MacDonald, Lynn Stevenson, Frazer Bell, Dawn Dunbar, Michael McDonald, Fiona Howie, Bryn Tennant, Darcy Herrity, Ana Da Silva Filipe, Daniel G Streicker, Brian J Willett, Pablo R Murcia, Ruth F Jarrett, David L Robertson and William Weir	MRC-University of Glasgow Centre for Virus Research		29051	97.55
	OEAV206713	hCoV-19/Felis catus/Belgium/BE-MG-0320/2020	EPI_ISL_487275	RNA virus	Severe acute respiratory syndrome coronavirus 2	Belgium	2020-03-11	Felis catus	29782	2020-07-13	Vomit fluid	2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID			Garigliany,M., Vanlaere,A.-S., Clercx,C., Giet,D., Escriou,N., Huon,C., van der Werf,S., Eloit,M., Desmecht,D.	Department of Veterinary Pathology, University of Liege - FARAH		29782	100.00
	OEAV210142	SARS-CoV-2/Felis catus/BEL/BE-MG-0320/2020	MT747438	RNA viruses	Severe acute respiratory syndrome coronavirus 2	Belgium	2020-03-11	Felis catus	29782	2020-07-13		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	NCBI Virus/Genbank			Garigliany,M., Vanlaere,A.-S., Clercx,C., Giet,D., Escriou,N., Huon,C., van der Werf,S., Eloit,M. and Desmecht,D.	Department of Veterinary Pathology, University of Liege - FARAH		29782	100.00
	OEAV202219	hCoV-19/cat/Spain/IrsiCaixa-G5/2020	EPI_ISL_482820	RNA virus	Severe acute respiratory syndrome coronavirus 2	Spain	2020-04-23	Felis catus	29742	2020-07-06		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID	Centre de Recerca en Sanitat Animal (IRTA-CReSA)	IRTA-CReSA Centre de Recerca en Sanitat Animal Campus UAB. Edifici CReSA. 08193 Bellaterra (Barcelona)	J. Segalés, M. Puig, J. Rodon, C. Avila-Nieto, J. Carrillo, G. Cantero, M.T. Terrón, S. Cruz, M. Parera ,M. Noguera-Julián, N. Izquierdo-Useros, V. Guallar, E. Vidal, A. Valencia, I. Blanco, J. Blanco, B. Clotet, J. Vergara-Alert	IrsiCaixa AIDS Research Lab	20x	15988	53.76
	OEAV202294	hCoV-19/Felis catus/France/Env-Ba/2020	EPI_ISL_483063	RNA virus	Severe acute respiratory syndrome coronavirus 2	France	2020-05-14	Felis catus	29838	2020-07-06	Home environment	2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID			Bessiere,P., Cadiergues,M.-C., Croville,G., Walch,M., Dubois,M., Izopet,J., Guerin,J.-L.	Virology, Ecole Nationale Veterinaire de Toulouse		29838	100.00
	OEAV202295	hCoV-19/Felis catus/France/Env-Di/2020	EPI_ISL_483064	RNA virus	Severe acute respiratory syndrome coronavirus 2	France	2020-05-14	Felis catus	29838	2020-07-06	Home environment	2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID			Bessiere,P., Cadiergues,M.-C., Croville,G., Walch,M., Dubois,M., Izopet,J., Guerin,J.-L.	Virology, Ecole Nationale Veterinaire de Toulouse		29838	100.00
	OEAV210143	SARS-CoV-2/Felis catus/FRA/Env-Ba/2020	MT709104	RNA viruses	Severe acute respiratory syndrome coronavirus 2	France	2020-05-14	Felis catus	29838	2020-07-06		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	NCBI Virus/Genbank			Bessiere,P., Cadiergues,M.-C., Croville,G., Walch,M., Dubois,M., Izopet,J. and Guerin,J.-L.	Virology, Ecole Nationale Veterinaire de Toulouse		29838	100.00
	OEAV210144	SARS-CoV-2/Felis catus/FRA/Env-Di/2020	MT709105	RNA viruses	Severe acute respiratory syndrome coronavirus 2	France	2020-05-14	Felis catus	29838	2020-07-06		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	NCBI Virus/Genbank			Bessiere,P., Cadiergues,M.-C., Croville,G., Walch,M., Dubois,M., Izopet,J. and Guerin,J.-L.	Virology, Ecole Nationale Veterinaire de Toulouse		29838	100.00
	OEAV159594	hCov-19/cat/France/53/2020	EPI_ISL_437349	RNA virus	Severe acute respiratory syndrome coronavirus 2	France	2020-04-17	Felis catus	29903	2020-05-08		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID	Ecole nationale vétérinaire d'Alfort-laboratoire de santé animale Anses UMR 1161 de virologie ENVA-Anses-INRAE	14 rue Pierre et Marie Curie 94703 Maisons-Alfort France	Sophie Le Poder, Corinne Sailleau, Marine Dumarest, Bernard Klonjkowski, Stéphan Zientara	Institut Pasteur CIBU-ERI		28020	93.70
	OEAV172569	hCoV-19/cat/USA/NYAD1/2020	EPI_ISL_450406	RNA virus	Severe acute respiratory syndrome coronavirus 2	United States	2020-04-01	Felis catus	307	2020-05-04	Oropharyngeal/conjunctival swab	2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID			Leutenegger,C.M., Lozoya,C.E., Tereski,J.L., Wyler,D. and Moroff,S.	Molecular Diagnostics		307	100.00
	OEAV172570	hCoV-19/cat/USA/NYAD2/2020	EPI_ISL_450407	RNA virus	Severe acute respiratory syndrome coronavirus 2	United States	2020-04-06	Felis catus	307	2020-05-04	Oropharyngeal/conjunctival swab	2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID			Leutenegger,C.M., Lozoya,C.E., Tereski,J.L. and Moroff,S.	Molecular Diagnostics		307	100.00
	OEAV210212	SARS-CoV-2/feline/USA/NYAD1/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) gene, complete cds; and ORF8 protein (ORF8) gene	MT425183	RNA viruses	Severe acute respiratory syndrome coronavirus 2	United States	2020-04-01	Felis catus	307	2020-05-04		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	NCBI Virus/Genbank			Leutenegger,C.M., Lozoya,C.E., Tereski,J.L., Wyler,D. and Moroff,S.	Molecular Diagnostics, Antech Diagnostics		307	100.00
	OEAV210213	SARS-CoV-2/feline/USA/NYAD2/2020 ORF7a protein (ORF7a) gene, partial cds; ORF7b (ORF7b) gene, complete cds; and ORF8 protein (ORF8) gene	MT425184	RNA viruses	Severe acute respiratory syndrome coronavirus 2	United States	2020-04-06	Felis catus	307	2020-05-04		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	NCBI Virus/Genbank			Leutenegger,C.M., Lozoya,C.E., Tereski,J.L. and Moroff,S.	Molecular Diagnostics, Antech Diagnostics		307	100.00
	OEAV151176	hCov-19/cat/China/Wuhan/2020	EPI_ISL_421531	RNA virus	Severe acute respiratory syndrome coronavirus 2	China	2020-03-15	Felis catus	835	2020-04-08		2697049	Severe acute respiratory syndrome-related coronavirus	Betacoronavirus	Coronaviridae	GISAID	State Key Laboratory of Agricultural Microbiology	No.1,Shizishan Street · Hongshan District · Wuhan · Hubei Province · 430070 · P.R.China	Meilin Jin	State Key Laboratory of Agricultural Microbiology		835	100.00

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