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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV2129573 hCoV-19/cat/Belarus/RRPCEM-VIS_1884O/2021 EPI_ISL_2100634 RNA virus Severe acute respiratory syndrome coronavirus 2 Belarus 2020-11-19 Felis catus 29767 2021-05-15 Organ 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Laboratory of Biosafety with Pathogens Collection The Republican Research and Practical Center for Epidemiology and Microbiology (RRPCEM) Republic of Belarus, 220114, Minsk, 23 Filimonova str. Ilarion Kupryianav, Iryna Subotsina, Anatoli Krasko, Olga Klimovoch, Elena Gasich, Kirill Bulda, Artur Akhremchuk, Leonid Valentovich, Sergei Semenov, Olga Saleuskaya, Larysa Radzienava 19 ноября Laboratory for HIV and opportunistic infections diagnosis The Republican Research and Practical Center for Epidemiology and Microbiology (RRPCEM) 2600x 29763 99.99
OEAV2129572 hCoV-19/cat/Argentina/PAIS-A0344/2020 EPI_ISL_1914577 RNA virus Severe acute respiratory syndrome coronavirus 2 Argentina 2020-09-05 Felis catus 29812 2021-05-05 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Unidad de diagnóstico COVID-19, Facultad de Ciencias Veterinarias (FCV), Universidad Nacional de La Plata (UNLP), Argentina. Av. 60 y 118, B1900 La Plata, Provincia de Buenos Aires Nadia Analía Fuentealba, Gastón More, María Emilia Bravi, Juan Manuel Unzaga, Lorena De Felice, Marcos Salina, Mariana Viegas, Mercedes Soledad Nabaes Jodar, Laura Elena Valinotto, Fernando David Rivero, David Di Llulo, Marcelo Pecoraro, Carlos Javier Panei Área de Secuenciación del Laboratorio de Virología del Hospital de Niños Dr. Ricardo Gutierrez on behalf of 'Proyecto Argentino Interinstitucional de genomica de SARS-CoV-2' (PAIS Consortium) 28025 94.01
OEAV1470678 hCoV-19/cat/USA/AZ-TG787435/2021 EPI_ISL_1525089 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-03-16 Felis catus 29863 2021-04-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Sonora Quest Laboratories 424 South 56th Street Suite 100 Phoenix AZ 85034 Jolene Bowers, Heather Centner, Chris French, Hayley Yaglom, Ashlyn Pfeiffer, Darrin Lemmer, Dave Engelthaler, The Arizona COVID Genomics Union (ACGU) TGen North 28502 95.44
OEAV1108510 hCoV-19/cat/France/IDF-CH1/2020 EPI_ISL_1328819 RNA virus Severe acute respiratory syndrome coronavirus 2 France 2020-11-20 Felis catus 197 2021-03-24 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID VEBIO 41 Bis Avenue Aristide Briand, 94110 Arcueil Meriadeg AR GOUILH, Nicolas NESI, Matthieu FRITZ, Estelle LEPERCHOIS, Astrid VABRET GRAM2.0, Université de Caen Normandie / Laboratoire de Virologie, CHU de Caen 197 100.00
OEAV1108511 hCoV-19/cat/France/IDF-CH2/2020 EPI_ISL_1328821 RNA virus Severe acute respiratory syndrome coronavirus 2 France 2020-11-20 Felis catus 322 2021-03-24 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID VEBIO 41 Bis Avenue Aristide Briand, 94110 Arcueil Meriadeg AR GOUILH, Nicolas NESI, Matthieu FRITZ, Estelle LEPERCHOIS, Astrid VABRET GRAM2.0, Université de Caen Normandie / Laboratoire de Virologie, CHU de Caen 318 98.76
OEAV1108512 hCoV-19/cat/France/IDF-CH3/2020 EPI_ISL_1328824 RNA virus Severe acute respiratory syndrome coronavirus 2 France 2020-11-20 Felis catus 120 2021-03-24 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID VEBIO 41 Bis Avenue Aristide Briand, 94110 Arcueil Meriadeg AR GOUILH, Nicolas NESI, Matthieu FRITZ, Estelle LEPERCHOIS, Astrid VABRET GRAM2.0, Université de Caen Normandie / Laboratoire de Virologie, CHU de Caen 120 100.00
OEAV1108513 hCoV-19/cat/France/IDF-CH4/2020 EPI_ISL_1328826 RNA virus Severe acute respiratory syndrome coronavirus 2 France 2020-11-20 Felis catus 155 2021-03-24 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID VEBIO 41 Bis Avenue Aristide Briand, 94110 Arcueil Meriadeg AR GOUILH, Nicolas NESI, Matthieu FRITZ, Estelle LEPERCHOIS, Astrid VABRET GRAM2.0, Université de Caen Normandie / Laboratoire de Virologie, CHU de Caen 155 100.00
OEAV1130653 hCoV-19/cat/USA/TX-TAMU-21-005988-005-467/2020 EPI_ISL_1315075 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-12 Felis catus 29784 2021-03-23 Nasal swab (PCR Cts~24-25) 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Texas A&M College of Veterinary Medicine & Biomedical Sciences via Wisconsin Veterinary Diagnostic Laboratory, University of Wisconsin-Madison Texas A&M College of Veterinary Medicine & Biomedical Sciences, 4461 TAMU, College Station, TX 77843-4461 Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Sarah A. Hamer, Gabriel L. Hamer, Ria R. Ghai, Casey Barton Behravesh, Ailam Lim Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 1,976.96x (median) 29784 100.00
OEAV858260 SARS-CoV-2/Cat/USA/FL-BPHL-1081/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW725609 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29810 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Schmedes,S. and Blanton,J. BPHL, FLDOH 29532 99.07
OEAV858261 SARS-CoV-2/Cat/USA/FL-BPHL-1082/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), and envelope protein (E) genes, complete cds; membrane glycoprotein (M) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW725610 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29782 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Schmedes,S. and Blanton,J. BPHL, FLDOH 25300 84.95
OEAV858262 SARS-CoV-2/Cat/USA/FL-BPHL-1083/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW725611 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29831 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Schmedes,S. and Blanton,J. BPHL, FLDOH 29588 99.19
OEAV994373 hCoV-19/cat/USA/FL-BPHL-1081/2021 EPI_ISL_1218882 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29810 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Florida Bureau of Public Health Laboratories 1217 N. Pearl Street Jacksonville, FL 32202 Sarah Schmedes, Jason Blanton Florida Bureau of Public Health Laboratories 2478x 29532 99.07
OEAV994374 hCoV-19/cat/USA/FL-BPHL-1082/2021 EPI_ISL_1218883 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29782 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Florida Bureau of Public Health Laboratories 1217 N. Pearl Street Jacksonville, FL 32202 Sarah Schmedes, Jason Blanton Florida Bureau of Public Health Laboratories 619x 25300 84.95
OEAV994375 hCoV-19/cat/USA/FL-BPHL-1083/2021 EPI_ISL_1218884 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-02-22 Felis catus 29831 2021-03-11 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Florida Bureau of Public Health Laboratories 1217 N. Pearl Street Jacksonville, FL 32202 Sarah Schmedes, Jason Blanton Florida Bureau of Public Health Laboratories 2404x 29588 99.19
OEAV589855 SARS-CoV-2/Felis catus/CHE/ZH-UZH-Cat1/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW600500 RNA viruses Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-11-16 Felis catus 29663 2021-02-16 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Klaus,J., Meli,M.L., Hofmann-Lehmann,R., Beisel,C., Nadeau,S., Chen,C., Topolsky,I., Jablonski,P., Fuhrmann,L., Dreifuss,D., Jahn,K., Denes,R., Nissen,I., Santacroce,N., Burcklen,E., Beerenwinkel,N. and Stadler,T. Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 26, Basel 4058, Switzerland 29446 99.27
OEAV841540 hCoV-19/Switzerland/ZH-UZH-Cat1/2020 EPI_ISL_1005699 RNA virus Severe acute respiratory syndrome coronavirus 2 Switzerland 2020-11-16 Felis catus 29663 2021-02-16 Nasal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Clinical Laboratory, Vetsuisse Faculty, University of Zurich Winterthurerstrasse 260, 8057 Zurich Julia Klaus, Marina Luisa Meli, Regina Hofmann-Lehmann, Christian Beisel, Sarah Nadeau, Chaoran Chen, Ivan Topolsky, Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Katharina Jahn, Rebecca Denes, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Niko Beerenwinkel, Tanja Stadler Department of Biosystems Science and Engineering, ETH Zürich 2803x 29446 99.27
OEAV738845 hCoV-19/cat/Italy/VE-IZSVe-20DIA30040-2/2020 EPI_ISL_962892 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-11-27 Felis catus 29746 2021-02-10 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ULSS 03 Venezia PIAZZALE S.L. GIUSTINIANI, 11/D - LOC.ZELARINO 30174 VENEZIA (VE) Natale Alda, Mazzotta Elisa, Mason Nicoletta, Ceglie Letizia, Lucchese L, Stefani Annalisa, Bonfante Francesco, Bortolami Alessio, Fincato Alice, Monne Isabella, Bellinati Laura, Mion Monica, Guadagno Carmine, Quaranta Erika, Pastori Ambra, Terregino Calogero Istituto Zooprofilattico Sperimentale delle Venezie 29746 100.00
OEAV789003 hCoV-19/cat/Russia/LEN-RII-22390S/2021 EPI_ISL_873040 RNA virus Severe acute respiratory syndrome coronavirus 2 Russia 2021-01-08 Felis catus 29782 2021-01-26 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID WHO National Influenza Centre Russian Federation Prof Popova Str. 15/17, Saint Petersburg, Russian Federation, 197376 Andrey Komissarov, Artem Fadeev, Anna Ivanova, Kseniya Komissarova, Dmitry Bazhenov, Mikhail Bakaev, Daria Danilenko, Ksenia Safina, Elena Nabieva, Georgii Bazykin, Dmitry Lioznov WHO National Influenza Centre Russian Federation 29543 99.20
OEAV488608 SARS-CoV-2/Felis catus/FRA/LHOOQ/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW513511 RNA viruses Severe acute respiratory syndrome coronavirus 2 France 2020-09-24 Felis catus 29664 2021-01-25 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Bessiere,P., Walch,M., Fusade-Boyer,M., Lebre,L., Croville,G., Cadiergues,M.-C. and Guerin,J.-L. Virology, Ecole Nationale Veterinaire de Toulouse 27053 91.20
OEAV789002 hCoV-19/cat/France/un-ENVT-LHOOQ/2020 EPI_ISL_873210 RNA virus Severe acute respiratory syndrome coronavirus 2 France 2020-09-24 Felis catus 29664 2021-01-25 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Virology, Ecole Nationale Veterinaire de Toulouse 23 chemin des Capelles, Toulouse 31300, France Bessiere,P., Walch,M., Fusade-Boyer,M., Lebre,L., Croville,G.,Cadiergues,M.-C. and Guerin,J.-L. Virology, Ecole Nationale Veterinaire de Toulouse 27053 91.20
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