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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV533696 SARS-CoV-2/Mink/USA/MI-CDC-IHPJ-6890/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW562251 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29912 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29714 99.34
OEAV533697 SARS-CoV-2/Mink/USA/MI-CDC-IHWB-7153/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW562253 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-15 Mustela lutreola 29912 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29358 98.15
OEAV533698 SARS-CoV-2/Mink/USA/MI-CDC-II1O-7265/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; and ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW562254 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-16 Mustela lutreola 29773 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 28875 96.98
OEAV533816 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHO1-6827/2020 MW562262 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29899 100.00
OEAV533817 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHOZ-6866/2020 MW562263 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533818 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHP1-6869/2020 MW562264 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533819 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHP2-6870/2020 MW562258 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29898 99.99
OEAV533820 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHQ4-6914/2020 MW562265 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29897 99.99
OEAV533821 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHQ7-6918/2020 MW562266 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29898 99.99
OEAV533822 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHQE-6926/2020 MW562267 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533823 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHQV-6946/2020 MW562261 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29894 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29890 99.99
OEAV533824 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHRD-6976/2020 MW562268 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533825 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHRM-6977/2020 MW562269 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533826 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHRU-6987/2020 MW562252 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29912 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29912 100.00
OEAV533827 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHS4-6998/2020 MW562270 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533828 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHSI-7015/2020 MW562271 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533829 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHSO-7022/2020 MW562272 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29899 100.00
OEAV533830 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHTR-7067/2020 MW562273 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533831 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHTS-7068/2020 MW562274 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533832 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHU3-7081/2020 MW562275 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
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