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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV1470942 hCoV-19/lion/Spain/CT-ZooBarcelona-CR-158-35-P002TH1H6/2020 EPI_ISL_1740500 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2020-11-16 Panthera leo 29678 2021-04-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Zoo Barcelona | IRTA-CReSA Parc Zoològic de Barcelona, Parc de la Ciutadella, s/n, 08003 Barcelona, Spain.Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona, Spain. J.Rodon, L. Fernández-Bastit, M. Noguera-Julian, M. Casadellà, M. Parera, F. Català-Moll, R. Paredes, B. Clotet, H. Fernández-Bellón, J. Vergara-Alert IrsiCaixa 456x 18030 60.75
OEAV1470943 hCoV-19/lion/Spain/CT-ZooBarcelona-CR_162.1.1-R009AO3D1/2020 EPI_ISL_1740499 RNA virus Severe acute respiratory syndrome coronavirus 2 Spain 2020-11-13 Panthera leo 29515 2021-04-27 Nasopharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Zoo Barcelona | IRTA-CReSA Parc Zoològic de Barcelona, Parc de la Ciutadella, s/n, 08003 Barcelona, Spain.Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Centre de Recerca en Sanitat Animal (CReSA), Campus de la Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona, Spain. J.Rodon, L. Fernández-Bastit, M. Noguera-Julian, M. Casadellà, M. Parera, F. Català-Moll, R. Paredes, B. Clotet, H. Fernández-Bellón, J. Vergara-Alert IrsiCaixa 671.32x 18681 63.29
OEAV1470941 hCoV-19/lion/Czech Republic/3855-1/2021 EPI_ISL_1497613 RNA virus Severe acute respiratory syndrome coronavirus 2 Czech Republic 2021-02-25 Panthera leo 29717 2021-04-07 Faeces, mixed specimen 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID State Veterinary Institute Prague Sidlistni 136/24 165 03, Prague Czech Republic Nagy,A;Cernikova,L;Stara,M State Veterinary Institute Prague 29717 100.00
OEAV392455 SARS-CoV-2/Panthera leo/USA/lion-041520/2020 ORF1ab polyprotein, 2'-O-ribose methyltransferase region, (ORF1ab) gene, partial cds; surface glycoprotein (S) gene, complete cds; and ORF3a protein (ORF3a) gene MT724343 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 4016 2020-12-02 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cardia Caserta,L. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 4016 100.00
OEAV392456 SARS-CoV-2/Panthera leo/USA/lion-2-041520/2020 ORF1ab polyprotein, 2'-O-ribose methyltransferase region, (ORF1ab) gene, partial cds; surface glycoprotein (S) gene, complete cds; and ORF3a protein (ORF3a) gene MT724341 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 4016 2020-12-02 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cardia Caserta,L. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 4016 100.00
OEAV392457 SARS-CoV-2/Panthera leo/USA/lion-3-041520/2020 ORF1ab polyprotein, 2'-O-ribose methyltransferase region, (ORF1ab) gene, partial cds; surface glycoprotein (S) gene, complete cds; and ORF3a protein (ORF3a) gene MT724342 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 4016 2020-12-02 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Cardia Caserta,L. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 4016 100.00
OEAV282738 SARS-CoV-2/Panthera leo/USA/lion-041520/2020 MT704312 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29862 2020-09-29 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank McAloose,D., Laverack,M., Wang,L., Killian,M.L., Cardia Caserta,L., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29862 100.00
OEAV282739 SARS-CoV-2/Panthera leo/USA/lion-2-041520/2020 MT704310 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29867 2020-09-29 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank McAloose,D., Laverack,M., Wang,L., Killian,M.L., Cardia Caserta,L., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29866 100.00
OEAV282740 SARS-CoV-2/Panthera leo/USA/lion-3-041520/2020 MT704311 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29863 2020-09-29 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank McAloose,D., Laverack,M., Wang,L., Killian,M.L., Cardia Caserta,L., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29859 99.99
OEAV282762 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Panthera leo/USA/lion-2_Fecal_isolate/2020 MT747978 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29835 2020-09-29 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank McAloose,D., Laverack,M., Wang,L., Killian,M.L., Cardia Caserta,L., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K. and Diel,D.G. Population Medicine and Diagnostic Sciences, Cornell University 29835 100.00
OEAV305494 hCoV-19/lion/USA/NY-2/2020 EPI_ISL_566044 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29835 2020-07-13 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wildlife Conservation Society, Bronx Zoo 2300 Southern Boulevard, Bronx, New York 10460 McAloose,D., Laverack,M., Wang,L., Killian,M.L., Caserta,L.C., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K., Diel,D.G., Cardia Caserta,L., Mauldin,M. Diagnostic Virology Laboratory, United States Department of Agriculture, National Veterinary Services Laboratories, Population Medicine and Diagnostic Sciences, Cornell University 29835 100.00
OEAV305492 hCoV-19/lion/USA/NY-041520/2020 EPI_ISL_566038 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29862 2020-07-02 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wildlife Conservation Society, Bronx Zoo 2300 Southern Boulevard, Bronx, New York 10460 McAloose,D., Laverack,M., Wang,L., Killian,M.L., Caserta,L.C., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K., Diel,D.G., Cardia Caserta,L. Diagnostic Virology Laboratory, United States Department of Agriculture, National Veterinary Services Laboratories, Population Medicine and Diagnostic Sciences, Cornell University 29862 100.00
OEAV305493 hCoV-19/lion/USA/NY-2-041520/2020 EPI_ISL_566036 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29867 2020-07-02 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wildlife Conservation Society, Bronx Zoo 2300 Southern Boulevard, Bronx, New York 10460 McAloose,D., Laverack,M., Wang,L., Killian,M.L., Caserta,L.C., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K., Diel,D.G., Cardia Caserta,L. Diagnostic Virology Laboratory, United States Department of Agriculture, National Veterinary Services Laboratories, Population Medicine and Diagnostic Sciences, Cornell University 29866 100.00
OEAV305495 hCoV-19/lion/USA/NY-3-041520/2020 EPI_ISL_566037 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-04 Panthera leo 29863 2020-07-02 Feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Wildlife Conservation Society, Bronx Zoo 2300 Southern Boulevard, Bronx, New York 10460 McAloose,D., Laverack,M., Wang,L., Killian,M.L., Caserta,L.C., Yuan,F., Mitchell,P.K., Queen,K., Mauldin,M.R., Cronk,B.D., Bartlett,S.L., Sykes,J.M., Zec,S., Stokol,T., Ingerman,K., Delaney,M.A., Frederikson,R., Ivancic,M., Jenkins-Moore,M., Mozingo,K., Farnzen,K., Kuzmin,I., Hines Bergeson,N., Goodman,L., Wang,H., Tong,S., Fang,Y., Olmstead,C., McCann,C., Thomas,P., Goodrich,E., Elvinger,F., Smith,D.C., Slavinski,S., Calle,P.P., Terio,K., Torchetti,M.K., Diel,D.G., Cardia Caserta,L. Diagnostic Virology Laboratory, United States Department of Agriculture, National Veterinary Services Laboratories, Population Medicine and Diagnostic Sciences, Cornell University 29859 99.99
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