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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV9257927 hCoV-19/lion/USA/CO-21-031946-001/2021 EPI_ISL_6088015 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29828 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29828 100.00
OEAV9257928 hCoV-19/lion/USA/CO-21-031946-002/2021 EPI_ISL_6088016 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29845 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29845 100.00
OEAV9257930 hCoV-19/lion/USA/CO-21-031946-004/2021 EPI_ISL_6088025 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29843 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29843 100.00
OEAV9257936 hCoV-19/lion/USA/CO-21-031946-010/2021 EPI_ISL_6088046 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29789 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29789 100.00
OEAV9257937 hCoV-19/lion/USA/CO-21-031946-011/2021 EPI_ISL_6088051 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-14 Panthera leo 29825 2021-11-09 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Colorado State University Veterinary Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29825 100.00
OEAV9667614 hCoV-19/lion/SouthAfrica/ZARV-ZRU125/2021 EPI_ISL_6261983 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-22 Panthera leo 29846 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29242 97.98
OEAV9667615 hCoV-19/lion/SouthAfrica/ZARV-ZRU127/2021 EPI_ISL_6261987 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-25 Panthera leo 29886 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29411 98.41
OEAV9667616 hCoV-19/lion/SouthAfrica/ZARV-ZRU128/2021 EPI_ISL_6261989 RNA virus Severe acute respiratory syndrome coronavirus 2 South Africa 2021-06-25 Panthera leo 29886 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID ZARV, Department Medical Virology, University of Pretoria Amy Strydom, Adriano Mendes, Katja Koeppel, Lia Rotherham and Marietjie Venter ZARV, Department Medical Virology, University of Pretoria 29281 97.98
OEAV9667617 hCoV-19/lion/USA/MO-21-033928-007/2021 EPI_ISL_6639383 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-04 Panthera leo 29789 2021-11-23 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Veterinary Medical Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29789 100.00
OEAV9738753 hCoV-19/tiger/USA/CA-21-032685-002/2021 EPI_ISL_6261446 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-25 Panthera tigris 29828 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29828 100.00
OEAV9738754 hCoV-19/tiger/USA/CA-21-032969-001/2021 EPI_ISL_6261447 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris tigris 29782 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29782 100.00
OEAV9738755 hCoV-19/tiger/USA/CA-21-032969-002/2021 EPI_ISL_6261448 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris tigris 29783 2021-11-14 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29783 100.00
OEAV9738756 hCoV-19/tiger/USA/CA-SEARCH-113029/2021 EPI_ISL_6257965 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris 29874 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29640 99.22
OEAV9738757 hCoV-19/tiger/USA/CA-SEARCH-113030/2021 EPI_ISL_6257966 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-27 Panthera tigris 29881 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29678 99.32
OEAV9738758 hCoV-19/tiger/USA/CA-SEARCH-113034/2021 EPI_ISL_6257968 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-10-21 Panthera tigris 29874 2021-11-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy and Brett Austin Andersen lab at Scripps Research 29633 99.19
OEAV9738759 hCoV-19/tiger/USA/MO-21-033928-005/2021 EPI_ISL_6639379 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-04 Panthera tigris 29781 2021-11-23 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Veterinary Medical Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29489 99.02
OEAV9738760 hCoV-19/tiger/USA/NE-21-034299-001/2021 EPI_ISL_6810903 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-07 Panthera tigris 29770 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29770 100.00
OEAV9738761 hCoV-19/tiger/USA/NE-21-034299-005/2021 EPI_ISL_6810904 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-07 Panthera tigris 29804 2021-11-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29804 100.00
OEAV9738762 hCoV-19/tiger/USA/NE-TIGER_NCOV21-40166/2021 EPI_ISL_6123998 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-06 Panthera tigris 29760 2021-11-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Nebraska Public Health Laboratory NPHL COVID-19 Response Team NPHL COVID-19 Response Team 29189 98.08
OEAV9738763 hCoV-19/tiger/USA/NE-TIGER_NCOV21-40167/2021 EPI_ISL_6123999 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-11-07 Panthera tigris 29760 2021-11-10 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Nebraska Public Health Laboratory NPHL COVID-19 Response Team NPHL COVID-19 Response Team 29486 99.08
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