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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV10468895 hCoV-19/lion/USA/AL-21-028712-001/2021 EPI_ISL_5867584 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-14 Panthera leo 29826 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Cornell Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29826 100.00
OEAV10468896 hCoV-19/lion/USA/AL-21-028713-002/2021 EPI_ISL_5867585 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-19 Panthera leo 29826 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Cornell Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29826 100.00
OEAV10544333 hCoV-19/tiger/USA/FL-21-028906-001/2021 EPI_ISL_5867588 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-17 Panthera tigris 29781 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29781 100.00
OEAV10544334 hCoV-19/tiger/USA/FL-21-029065-001/2021 EPI_ISL_5867592 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-17 Panthera tigris 29829 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID IDEXX Reference Laboratories Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29829 100.00
OEAV10544335 hCoV-19/tiger/USA/IL-21-028948-002/2021 EPI_ISL_5867590 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-24 Panthera tigris tigris 29814 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Veterinary Diagnostic Laboratory University of Illinois at Urbana-Champaign Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29814 100.00
OEAV10544336 hCoV-19/tiger/USA/OH-21-028714-001/2021 EPI_ISL_5867587 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-09-15 Panthera tigris tigris 29807 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Ohio Department of Agriculture Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29807 100.00
OEAV3786784 SARS-CoV-2/Asiatic Lion/IND/SARS-CoV-2_Lion_IND_CAD932_2020/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ413340 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2021-05-02 Panthera leo persica 29874 2021-08-26 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karikalan,M., Chander,V., Mahajan,S., Deol,P., Agrawal,R., Nandi,S., Singh,S.K., Mathur,A., Mallapur,G., Pawde,A., Singh,K.P. and Sharma,G.K. Center For Animal Disease Research and Diagnosis, ICAR-Indian Veterinary Research Institute 29655 99.27
OEAV3786785 SARS-CoV-2/Asiatic Lion/IND/SARS-CoV-2_Lion_IND_CAD936_2020/2021 MZ413341 RNA viruses Severe acute respiratory syndrome coronavirus 2 India 2021-05-02 Panthera leo persica 29876 2021-08-26 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Karikalan,M., Chander,V., Mahajan,S., Deol,P., Agrawal,R., Nandi,S., Singh,S.K., Mathur,A., Mallapur,G., Pawde,A., Singh,K.P. and Sharma,G.K. Center For Animal Disease Research and Diagnosis, ICAR-Indian Veterinary Research Institute 29873 99.99
OEAV7482605 hCoV-19/India/TG-CCMB-L1/2021 EPI_ISL_3098882 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-04-26 Panthera leo 29815 2021-07-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Nehru Zoological Park B. Sambasiva Rao, Md Abdul Hakeem, Sofia Banu , Shreekant Verma, Amareshwar Vodapalli ,Ara Sreenivas,B Himasri,Valli Nagalakshmi Undamatla,Payel Mukherjee, Lamuk Zaveri, Onkar Kulkarni,Tulasi Nagabandi, Jandhyala Sai Krishna,Sumedha Avadhanula, Priya Nurkurthy, Vidhyadhari Methuku, Archana Bharadwaj Siva, Karthik Bharadwaj Tallapaka,Rakesh K Mishra, Karthikeyan Vasudevan, Divya Tej Sowpati CSIR-Centre for Cellular and Molecular Biology 28560 95.79
OEAV7482606 hCoV-19/India/TG-CCMB-L2/2021 EPI_ISL_3098883 RNA virus Severe acute respiratory syndrome coronavirus 2 India 2021-04-26 Panthera leo 29740 2021-07-27 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Nehru Zoological Park B. Sambasiva Rao, Md Abdul Hakeem, Sofia Banu , Shreekant Verma, Amareshwar Vodapalli ,Ara Sreenivas,B Himasri,Valli Nagalakshmi Undamatla,Payel Mukherjee, Lamuk Zaveri, Onkar Kulkarni,Tulasi Nagabandi, Jandhyala Sai Krishna,Sumedha Avadhanula, Priya Nurkurthy, Vidhyadhari Methuku, Archana Bharadwaj Siva, Karthik Bharadwaj Tallapaka,Rakesh K Mishra, Karthikeyan Vasudevan, Divya Tej Sowpati CSIR-Centre for Cellular and Molecular Biology 28031 94.25
OEAV7576170 hCoV-19/Lion/Sweden/SVA210116SZ851481/2021 EPI_ISL_3376985 RNA virus Severe acute respiratory syndrome coronavirus 2 Sweden 2021-01-12 Panthera leo 29903 2021-08-13 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Borås Djurpark AB Erika Karlstam, Therese Hård, Katarina Näslund, Linda Forslund, Ulrika Larsson Pettersson, Leif Dotevall, Hanne Friis, Helen T. Michael, Karl Ståhl, Siamak Zohari and Aleksija Neimanis National Veterinary Institute 29903 100.00
OEAV7576171 hCoV-19/Lion/Sweden/SVA210116SZ851937/2021 EPI_ISL_3376991 RNA virus Severe acute respiratory syndrome coronavirus 2 Sweden 2021-01-12 Panthera leo 29902 2021-08-13 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Borås Djurpark AB Erika Karlstam, Therese Hård, Katarina Näslund, Linda Forslund, Ulrika Larsson Pettersson, Leif Dotevall, Hanne Friis, Helen T. Michael, Karl Ståhl, Siamak Zohari and Aleksija Neimanis National Veterinary Institute 29902 100.00
OEAV7779181 hCoV-19/Tiger/Sweden/SVA210113SZ0259-KN007616/2021 EPI_ISL_3376849 RNA virus Severe acute respiratory syndrome coronavirus 2 Sweden 2021-01-12 Panthera tigris 29903 2021-08-13 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Borås Djurpark AB Erika Karlstam, Therese Hård, Katarina Näslund, Linda Forslund, Ulrika Larsson Pettersson, Leif Dotevall, Hanne Friis, Helen T. Michael, Karl Ståhl, Aleksija Neimanis and Siamak Zohari National Veterinary Institute, SVA 29903 100.00
OEAV7856427 hCoV-19/USA/CA-ALSR-105425/2021 EPI_ISL_3374076 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-01 Panthera tigris 29585 2021-08-12 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy, Jovan Shephard, Brett Austin Andersen lab at Scripps Research 29563 99.93
OEAV7938744 hCoV-19/USA/CA-SEARCH-104929/2021 EPI_ISL_3261746 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-27 Panthera uncia 29597 2021-08-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy, Jovan Shephard, Brett Austin Andersen lab at Scripps Research 29430 99.44
OEAV7938745 hCoV-19/USA/CA-SEARCH-104930/2021 EPI_ISL_3261747 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-22 Panthera uncia 29597 2021-08-06 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID San Diego County Public Health Laboratory SEARCH Alliance San Diego with Ashleigh Murphy, Jovan Shephard, Brett Austin Andersen lab at Scripps Research 29476 99.59
OEAV9287155 hCoV-19/snowleopard/USA/CA-21-021568-001/2021 EPI_ISL_5858432 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-22 Panthera uncia 29836 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29836 100.00
OEAV9287156 hCoV-19/snowleopard/USA/CA-21-022131-001/2021 EPI_ISL_5858433 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-07-26 Panthera uncia 29805 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29559 99.17
OEAV9302541 hCoV-19/tiger/USA/CA-21-022578-002/2021 EPI_ISL_5850336 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-01 Panthera tigris sondaica 29790 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID California Animal Health and Food Safety Laboratory - University of California-Davis Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29790 100.00
OEAV9302542 hCoV-19/tiger/USA/FL-21-024706-001/2021 EPI_ISL_5850335 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2021-08-19 Panthera tigris 29826 2021-11-02 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Bronson Animal Disease Diagnostic Laboratory Kerrie M. Franzen, Mary L. Killian, Emily R. Love, Tod P. Stuber, Mia Torchetti, Suelee Robbe-Austerman Diagnostic Virology Laboratory, National Veterinary Services Laboratories, USDA1920 Dayton Avenue, Ames, IA 50010, USA 29826 100.00
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