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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV235973 hCoV-19/USA/UT-CDC-1251/2020 EPI_ISL_510160 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-25 environmental samples 29861 2020-08-06 swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Utah Public Health Laboratory 4431 2700 W, Salt Lake City UT 84129 Mary L. Killian, Kerrie Franzen, Krista Queen, Anna Uehara, Ying Tao, Yan Li, Jing Zhang, Clinton R. Paden, Haibin Wang, Suxiang Tong Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention 29579 99.06
OEAV230923 hCoV-19/env/Canada/AB-Z0001/2020 EPI_ISL_504185 RNA virus Severe acute respiratory syndrome coronavirus 2 Canada 2020-05-13 environmental samples 29866 2020-08-01 Wastewater from domestic sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Discovery DNA 1640 16 Ave NW #304, Calgary, AB T2M 0L6 Dustin Hittel, Marina Kerr, Leo Dimnik, Desmond Koo, Alice Li, Aneal Khan Discovery DNA 1000X 29861 99.98
OEAV227315 hCOV-19/England/SWG-MAR-nPCR1.4/2020 EPI_ISL_499042 RNA virus Severe acute respiratory syndrome coronavirus 2 United Kingdom 2020-03-11 environmental samples 714 2020-07-28 Sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Institute for Biological Standards and Control (NIBSC) Division of Virology Blanche Lane, Potters Bar, Hertfordshire EN6 3QG, United Kingdom Javier Martin, Dimitra Klapsa, Thomas Wilton National Institute for Biological Standards and Control (NIBSC) 714 100.00
OEAV197458 hCoV-19/env/USA/FL-UF-20/2020 EPI_ISL_477160 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-04-13 environmental samples 29894 2020-06-25 Air 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lednicky,J.A., Wu,C.-Y. and Morris,J.G. Environmental and Global Health 29894 100.00
OEAV191702 hCoV-19/env/Beijing/IVDC-03-06/2020 EPI_ISL_469256 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-06-11 environmental samples 29903 2020-06-17 Enviromental swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID National Institute for Viral Disease Control and Prevention, China CDC 155 Changbai Road, Changping District, 102206 Beijing, China Xiang Zhao,Lijuan Chen, Dayan Wang, Yong Zhang, Yao Meng,Zhixiao Chen,Yuchao Wu, Jun Han, Weifeng Shi, Yanhai Wang, William J. Liu, Shiwen Wang, George F. Gao, Wenbo Xu, Chun Huang, Guizhen Wu National Institute for Viral Disease Control and Prevention, China CDC 25,779.98x 29896 99.98
OEAV179578 hCoV-19/env/Italy/3233/2020 EPI_ISL_458009 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV179579 hCoV-19/env/Italy/3243-2/2020 EPI_ISL_458014 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 environmental samples 469 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 469 100.00
OEAV179580 hCoV-19/env/Italy/3243/2020 EPI_ISL_458010 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-02-28 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV179581 hCoV-19/env/Italy/3267/2020 EPI_ISL_458008 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV179582 hCoV-19/env/Italy/3268/2020 EPI_ISL_458011 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-03-30 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV179583 hCoV-19/env/Italy/3269/2020 EPI_ISL_458012 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV179584 hCoV-19/env/Italy/3270-2/2020 EPI_ISL_458015 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 environmental samples 469 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 469 100.00
OEAV179585 hCoV-19/env/Italy/3270/2020 EPI_ISL_458013 RNA virus Severe acute respiratory syndrome coronavirus 2 Italy 2020-04-30 environmental samples 287 2020-06-02 Raw sewage 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID La Rosa,G., Iaconelli,M., Mancini,P., Bonanno Ferraro,G., Veneri,C., Bonadonna,L., Lucentini,L., Suffredini,E. Department of Food Safety 287 100.00
OEAV172006 hCoV-19/env/USA/FL-UF11/2020 EPI_ISL_447900 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-02-21 environmental samples 29894 2020-05-15 Door handle 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lednicky Laboratory at Emerging Pathogens Institute 2055 Mowry Rd. Gainesville, Florida Zip Code 32608 Lednicky,J.A., Gibson,J.C., Alam,M.M., Stephenson,C.J., Elbadry,M.A. and Morris,J.G. Environmental and Global Health 29894 100.00
OEAV159593 hCoV-19/env/USA/MT-BWRF-0327/2020 EPI_ISL_437434 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-03-27 environmental samples 29903 2020-05-08 Wastewater 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Bozeman Water Reclamation Facility 2245 Springhill Rd, Bozeman, MT, 59715 Artem Nemudryi, Anna Nemudraia, Kevin Surya, Tanner Wiegand, Murat Buyukyoruk, Royce Wilkinson, Blake Wiedenheft Wiedenheft lab, Montana State University 6,875x (average) 29458 98.51
OEAV158860 hCoV-19/env/USA/FL-UF3/2020 EPI_ISL_434677 RNA virus Severe acute respiratory syndrome coronavirus 2 United States 2020-03-25 environmental samples 29889 2020-04-30 Breathing air using VIVAs Air sampler 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Lednicky Laboratory at Emerging Pathogens Institute 2055 Mowry Rd. Gainesville, Florida Zip Code 32608 Shankar,S.N., Wu,C.-Y., Clugston,J.R., Elbadry,M.A., Morris,J.G. Jr. and Lednicky,J.A. Lednicky Laboratory at Emerging Pathogens Institute 29889 100.00
OEAV152888 hCoV-19/Beijing/BJ2452/2020 EPI_ISL_430743 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-14 environmental samples 29782 2020-04-27 Enviromental swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Center for Disease prevetion and Control of PLA Dongda street 20#, Fengtai district, Beijing, China Peng Li,Jinhui Li, Lizhong Li Center for Disease prevetion and Control of PLA 4,389x 29782 100.00
OEAV152889 hCoV-19/Beijing/BJ2454/2020 EPI_ISL_430744 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-14 environmental samples 29778 2020-04-27 Enviromental swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Center for Disease prevetion and Control of PLA Dongda street 20#, Fengtai district, Beijing, China Peng Li,Jinhui Li, Lizhong Li Center for Disease prevetion and Control of PLA 4,635x 29526 99.15
OEAV152890 hCoV-19/Beijing/BJ2456/2020 EPI_ISL_430745 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-14 environmental samples 29732 2020-04-27 Enviromental swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Center for Disease prevetion and Control of PLA Dongda street 20#, Fengtai district, Beijing, China Peng Li,Jinhui Li, Lizhong Li Center for Disease prevetion and Control of PLA 3,828x 29620 99.62
OEAV152891 hCoV-19/Beijing/BJ2460/2020 EPI_ISL_430746 RNA virus Severe acute respiratory syndrome coronavirus 2 China 2020-03-14 environmental samples 29782 2020-04-27 Enviromental swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID Center for Disease prevetion and Control of PLA Dongda street 20#, Fengtai district, Beijing, China Peng Li,Jinhui Li, Lizhong Li Center for Disease prevetion and Control of PLA 4,956x 29744 99.87
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